Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2129s0010 Medicago truncatula HOM05D000384 ORTHO05D259802 2.6e-158 562.0 284 100.0
Pp3c15_17700 Physcomitrium patens HOM05D000384 ORTHO05D007626 1.4e-10 71.2 51 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1397 Anthoceros agrestis HOM05D000384 ORTHO05D007626 3.1e-10 70.1 46 67.4
Mapoly0001s0214 Marchantia polymorpha HOM05D000384 ORTHO05D007626 5.3e-10 69.3 51 66.7
Carub.0001s4447 Capsella rubella HOM05D000384 ORTHO05D007626 2.6e-09 67.0 43 65.1
Mapoly0003s0133 Marchantia polymorpha HOM05D000384 ORTHO05D007626 4.5e-09 66.2 40 75.0
Rhsim06G0228900 Rhododendron simsii HOM05D000384 ORTHO05D007626 4.5e-09 66.2 52 57.7
Aa31LG10G310 Aethionema arabicum HOM05D000384 ORTHO05D007626 1.0e-08 65.1 45 62.2
Sp1g41480 Schrenkiella parvula HOM05D000384 ORTHO05D007626 1.0e-08 65.1 55 50.9
AL1G64020 Arabidopsis lyrata HOM05D000384 ORTHO05D007626 1.7e-08 64.3 42 64.3
Dinv10324 Davidia involucrata HOM05D000864 ORTHO05D002353 1.7e-08 64.3 39 69.2
Lj8A178T73 Lonicera japonica HOM05D000384 ORTHO05D007626 1.7e-08 64.3 43 60.5
AT1G55880 Arabidopsis thaliana HOM05D000384 ORTHO05D007626 2.2e-08 63.9 42 64.3
BcaC08g43660 Brassica carinata HOM05D000384 ORTHO05D007626 2.2e-08 63.9 42 64.3
C06p10800 Brassica napus HOM05D000384 ORTHO05D007626 2.2e-08 63.9 42 64.3
BolC6t36164H Brassica oleracea HOM05D000384 ORTHO05D007626 2.2e-08 63.9 42 64.3
CSS0037227 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D007626 2.2e-08 63.9 39 69.2
CARHR045580 Cardamine hirsuta HOM05D000384 ORTHO05D007626 2.2e-08 63.9 42 64.3
Os03g0215800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D007626 2.2e-08 63.9 62 53.2
Sc03g0011190 Simmondsia chinensis HOM05D000384 ORTHO05D007626 2.2e-08 63.9 39 71.8
BcaNung06013 Brassica carinata HOM05D000384 ORTHO05D007626 2.9e-08 63.5 42 64.3
THA.LOC104815696 Tarenaya hassleriana HOM05D000384 ORTHO05D007626 2.9e-08 63.5 39 71.8
Cfa020201 Carpinus fangiana HOM05D000384 ORTHO05D007626 3.8e-08 63.2 39 69.2
Haze_09814 Corylus avellana HOM05D000384 ORTHO05D007626 3.8e-08 63.2 39 69.2
Thhalv10011512m.g Eutrema salsugineum HOM05D000384 ORTHO05D007626 3.8e-08 63.2 39 69.2
Phvul.008G278600 Phaseolus vulgaris HOM05D000384 ORTHO05D007626 3.8e-08 63.2 43 60.5
Gohir.A04G006300 Gossypium hirsutum HOM05D000384 ORTHO05D007626 5.0e-08 62.8 39 69.2
Gohir.D05G383200 Gossypium hirsutum HOM05D000384 ORTHO05D007626 5.0e-08 62.8 39 69.2
Gorai.009G449800 Gossypium raimondii HOM05D000384 ORTHO05D007626 5.0e-08 62.8 39 69.2
Cpa.g.sc12.155 Carica papaya HOM05D000384 ORTHO05D007626 6.5e-08 62.4 39 69.2
Ciclev10008354m.g Citrus clementina HOM05D000384 ORTHO05D007626 6.5e-08 62.4 39 69.2
FAN25G1421 Fragaria x ananassa HOM05D000384 ORTHO05D007626 6.5e-08 62.4 43 62.8
QL08p004240 Quercus lobata HOM05D000384 ORTHO05D007626 6.5e-08 62.4 39 66.7
GSVIVG01014666001 Vitis vinifera HOM05D000384 ORTHO05D007626 6.5e-08 62.4 39 66.7
Actinidia05013 Actinidia chinensis HOM05D000384 ORTHO05D007626 8.5e-08 62.0 39 66.7
CDE04G0196 Ceratophyllum demersum HOM05D000384 ORTHO05D007626 8.5e-08 62.0 40 62.5
COL.COLO4_09819 Corchorus olitorius HOM05D000384 ORTHO05D007626 8.5e-08 62.0 39 69.2
COL.COLO4_38429 Corchorus olitorius HOM05D000384 ORTHO05D007626 8.5e-08 62.0 39 69.2
CiPaw.11G203000 Carya illinoinensis HOM05D000384 ORTHO05D007626 1.1e-07 61.6 39 66.7
Potri.001G367000 Populus trichocarpa HOM05D000384 ORTHO05D007626 1.1e-07 61.6 52 53.8
RcHm_v2.0_Chr5g0053771 Rosa chinensis HOM05D000384 ORTHO05D007626 1.1e-07 61.6 74 45.9
Hund01899 Selenicereus undatus HOM05D000384 ORTHO05D007626 1.1e-07 61.6 37 73.0
Cc07_g14520 Coffea canephora HOM05D000384 ORTHO05D007626 1.5e-07 61.2 89 44.9
FvH4_3g29380 Fragaria vesca HOM05D000384 ORTHO05D007626 1.5e-07 61.2 43 62.8
FAN11G3019 Fragaria x ananassa HOM05D000384 ORTHO05D007626 1.5e-07 61.2 43 62.8
FAN21G4039 Fragaria x ananassa HOM05D000384 ORTHO05D007626 1.5e-07 61.2 43 62.8
Glyma.14G014000 Glycine max HOM05D000384 ORTHO05D007626 1.5e-07 61.2 37 70.3
Manes.15G060800 Manihot esculenta HOM05D000384 ORTHO05D007626 1.5e-07 61.2 43 62.8
Medtr5g095670 Medicago truncatula HOM05D000384 ORTHO05D007626 1.5e-07 61.2 39 64.1
Nitab4.5_0014607g0020 Nicotiana tabacum HOM05D000384 ORTHO05D007626 1.5e-07 61.2 39 69.2
TPR.G8616 Trifolium pratense HOM05D000384 ORTHO05D007626 1.5e-07 61.2 39 64.1
Atru.chr2.3677 Acer truncatum HOM05D000384 ORTHO05D007626 1.9e-07 60.8 39 66.7
Cfa023873 Carpinus fangiana HOM05D000384 ORTHO05D007626 1.9e-07 60.8 37 70.3
Mapoly0001s0224 Marchantia polymorpha HOM05D000384 ORTHO05D007626 1.9e-07 60.8 40 65.0
Nitab4.5_0000461g0240 Nicotiana tabacum HOM05D000384 ORTHO05D007626 1.9e-07 60.8 39 66.7
TWI38G0222 Tripterygium wilfordii HOM05D000384 ORTHO05D007626 1.9e-07 60.8 40 67.5
HanXRQChr05g0159901 Helianthus annuus HOM05D000384 ORTHO05D007626 2.5e-07 60.5 43 62.8
MBI16_g22429_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D007626 2.5e-07 60.5 39 66.7
Nn1g07495 Nelumbo nucifera HOM05D000384 ORTHO05D007626 2.5e-07 60.5 40 62.5
SalBow8G2011 Salvia bowleyana HOM05D000384 ORTHO05D007626 2.5e-07 60.5 40 67.5
SGA_v2.0_scaffold168G38555 Striga asiatica HOM05D000384 ORTHO05D007626 2.5e-07 60.5 66 45.5
Lsat_1_v5_gn_5_1441 Lactuca sativa HOM05D000384 ORTHO05D007626 3.2e-07 60.1 39 66.7
PGR083G0681 Punica granatum HOM05D000384 ORTHO05D007626 3.2e-07 60.1 52 50.0
PGSC0003DMG400022283 Solanum tuberosum HOM05D000384 ORTHO05D007626 3.2e-07 60.1 39 69.2
Thecc.07G015000 Theobroma cacao HOM05D000384 ORTHO05D007626 3.2e-07 60.1 37 70.3
TAR629G2823 Trochodendron aralioides HOM05D000384 ORTHO05D007626 3.2e-07 60.1 40 62.5
VMungo0647G2472 Vigna mungo HOM05D000384 ORTHO05D007626 3.2e-07 60.1 43 58.1
MSTRG.15792 Avicennia marina HOM05D000384 ORTHO05D007626 4.2e-07 59.7 39 69.2
BraSC56t46397Z Brassica rapa HOM05D000384 ORTHO05D007626 4.2e-07 59.7 42 61.9
CBR_g17931 Chara braunii HOM05D000384 ORTHO05D007626 4.2e-07 59.7 37 70.3
Cre16.g664250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D007626 4.2e-07 59.7 40 65.0
Prupe.4G242200 Prunus persica HOM05D000384 ORTHO05D007626 4.2e-07 59.7 52 50.0
SHI26535 Sapria himalayana HOM05D000384 ORTHO05D007626 4.2e-07 59.7 39 61.5
Sopen07g033680 Solanum pennellii HOM05D000384 ORTHO05D007626 4.2e-07 59.7 39 69.2
MD11G1201000 Malus domestica HOM05D000384 ORTHO05D007626 5.5e-07 59.3 39 66.7
PSO832G3455 Papaver somniferum HOM05D000384 ORTHO05D007626 5.5e-07 59.3 37 67.6
Psat2g007720 Pisum sativum HOM05D000384 ORTHO05D007626 5.5e-07 59.3 55 47.3
Sabra16G0240300 Salix brachista HOM05D000384 ORTHO05D007626 5.5e-07 59.3 43 60.5
HPP92_007732 Vanilla planifolia HOM05D000384 ORTHO05D007626 5.5e-07 59.3 39 61.5
AUR62017086 Chenopodium quinoa HOM05D000384 ORTHO05D007626 7.2e-07 58.9 37 70.3
AUR62036410 Chenopodium quinoa HOM05D000384 ORTHO05D007626 7.2e-07 58.9 37 70.3
AUR62036443 Chenopodium quinoa HOM05D000384 ORTHO05D007626 7.2e-07 58.9 37 70.3
MELO3C024929.2 Cucumis melo HOM05D000384 ORTHO05D007626 7.2e-07 58.9 39 64.1
CsaV3_7G015080 Cucumis sativus L. HOM05D000384 ORTHO05D007626 7.2e-07 58.9 39 64.1
Lalb_Chr10g0107391 Lupinus albus HOM05D000384 ORTHO05D007626 7.2e-07 58.9 39 61.5
unitig_62.g23299 Utricularia gibba HOM05D001707 ORTHO05D007626 7.2e-07 58.9 37 73.0
Ah.04g166530 Amaranthus hybridus HOM05D000384 ORTHO05D007626 9.4e-07 58.5 38 68.4
EL10Ac4g07593 Beta vulgaris HOM05D000384 ORTHO05D007626 9.4e-07 58.5 37 70.3
CANSAT11G1006 Cannabis sativa HOM05D000384 ORTHO05D007626 9.4e-07 58.5 51 51.0
Ca_06390_v3 Cicer arietinum L. HOM05D000384 ORTHO05D007626 9.4e-07 58.5 37 67.6
Pp3c5_7330 Physcomitrium patens HOM05D000384 ORTHO05D007626 9.4e-07 58.5 48 52.1
Eucgr.F02054 Eucalyptus grandis HOM05D000384 ORTHO05D007626 1.6e-06 57.8 39 61.5
MD03G1184200 Malus domestica HOM05D000384 ORTHO05D007626 1.6e-06 57.8 38 65.8
ECA246G1272 Erigeron canadensis HOM05D000384 ORTHO05D007626 2.1e-06 57.4 38 65.8
Migut.M01659 Erythranthe guttata HOM05D000384 ORTHO05D007626 2.1e-06 57.4 37 67.6
SMO118G0222 Selaginella moellendorffii HOM05D000384 ORTHO05D007626 2.1e-06 57.4 38 63.2
Aqoxy1G04246 Aquilegia oxysepala HOM05D000384 ORTHO05D007626 4.7e-06 56.2 39 59.0
PRCOL_00006749 Prasinoderma coloniale HOM05D000384 ORTHO05D007626 4.7e-06 56.2 37 62.2
Lj6g0018885 Lotus japonicus HOM05D000384 ORTHO05D007626 6.1e-06 55.8 37 62.2
arahy.Tifrunner.gnm1.ann1.0880BE Arachis hypogaea HOM05D000384 ORTHO05D007626 8.0e-06 55.5 39 61.5
arahy.Tifrunner.gnm1.ann1.KE1FF5 Arachis hypogaea HOM05D000384 ORTHO05D007626 8.0e-06 55.5 39 61.5


User provided reference genes

Program Settings