Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 0.0e+00 1664.4 947 100.0
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 0.0e+00 1526.9 966 91.9
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 0.0e+00 1314.7 969 78.9
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 0.0e+00 1270.4 964 77.2
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 0.0e+00 1227.6 961 74.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 0.0e+00 1225.7 966 73.7
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 0.0e+00 1190.3 970 72.5
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 0.0e+00 1145.2 963 70.5
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 0.0e+00 1124.4 962 71.4
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 0.0e+00 1116.7 955 69.6
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.2e-301 1038.1 951 67.3
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 2.2e-294 1015.8 988 63.2
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 7.1e-293 1010.7 983 64.7
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 2.2e-286 989.2 960 59.3
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 2.2e-278 962.6 959 59.6
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.1e-274 950.3 978 59.5
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 3.1e-272 942.2 962 59.6
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.2e-271 940.3 953 58.3
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.5e-271 939.9 962 59.5
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 3.4e-271 938.7 574 96.3
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 7.6e-271 937.6 965 58.4
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 2.2e-270 936.0 983 58.3
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 8.5e-270 934.1 971 60.0
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.9e-269 932.9 982 57.5
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 4.2e-269 931.8 966 59.0
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 3.3e-266 922.2 976 60.6
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 4.5e-263 911.8 970 58.9
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 8.5e-262 907.5 957 60.1
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 2.5e-261 906.0 943 55.6
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 9.7e-258 894.0 1001 55.8
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 9.1e-256 887.5 944 58.2
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 2.0e-255 886.3 935 56.8
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.8e-254 882.1 963 55.5
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 8.0e-252 874.4 881 59.1
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 5.2e-251 871.7 970 55.5
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 8.8e-251 870.9 946 54.2
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 2.8e-249 865.9 937 55.3
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 2.4e-248 862.8 947 57.0
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 1.2e-247 860.5 947 56.3
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.2e-247 860.5 954 54.6
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 2.0e-247 859.8 1085 48.9
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.5e-247 858.6 987 54.4
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 2.2e-246 856.3 946 55.1
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.2e-246 856.3 987 55.6
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.9e-245 853.2 949 55.7
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 4.2e-245 852.0 946 55.6
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.2e-242 844.0 977 53.7
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 4.4e-242 842.0 947 54.4
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.8e-241 839.3 971 53.9
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 4.8e-241 838.6 960 54.0
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.0e-240 834.7 952 54.5
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 1.0e-238 830.9 982 51.6
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.2e-237 824.7 957 51.9
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 8.0e-236 821.2 951 54.4
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 3.0e-235 819.3 951 56.6
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 3.0e-235 819.3 943 53.8
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.8e-235 817.8 948 52.1
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 2.6e-234 816.2 950 54.9
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 5.7e-234 815.1 992 54.1
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 3.1e-232 809.3 956 54.9
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.0e-231 806.6 937 53.6
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.0e-230 804.3 965 53.7
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 1.7e-230 803.5 951 52.4
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.1e-229 800.8 953 53.0
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 1.5e-229 800.4 949 54.5
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 3.3e-229 799.3 903 59.0
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-228 797.3 858 57.6
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.2e-228 797.3 946 50.8
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 6.8e-227 791.6 951 52.9
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 8.9e-227 791.2 943 53.2
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.0e-226 790.0 945 52.7
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.6e-226 789.6 953 52.8
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 5.7e-226 788.5 943 53.2
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 9.8e-226 787.7 1002 51.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.8e-225 786.2 935 51.4
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 2.8e-225 786.2 964 53.3
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.4e-224 783.1 953 51.5
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.6e-223 780.4 952 52.4
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 5.9e-223 778.5 921 51.9
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 5.9e-223 778.5 937 51.3
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 5.9e-223 778.5 954 51.7
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.3e-222 777.3 950 53.2
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.5e-221 773.1 954 53.9
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 2.5e-221 773.1 1044 49.5
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 1.6e-220 770.4 952 51.1
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.8e-220 769.6 941 48.9
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 3.6e-220 769.2 952 51.7
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.4e-218 762.3 958 50.9
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.3e-217 760.8 975 52.0
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 2.1e-212 743.4 448 85.3
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 3.4e-210 736.1 945 52.0
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 2.4e-208 729.9 991 49.8
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 6.8e-203 711.8 978 49.3
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.4e-202 709.5 878 50.6
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.5e-186 657.5 945 47.1
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 3.8e-185 652.9 839 51.5
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 9.6e-181 638.3 394 83.0
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 4.5e-178 629.4 957 45.5
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.3e-174 617.8 984 44.5
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 8.7e-174 615.1 976 44.0
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 6.5e-145 519.2 708 48.2
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.8e-123 448.0 633 46.4
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.3e-116 425.2 913 38.7
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 3.5e-114 417.2 522 54.4
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.0e-113 415.6 632 47.8
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 7.0e-107 392.9 333 71.5
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.3e-94 351.3 496 49.6
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.1e-91 342.4 628 41.4
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.1e-86 324.3 267 62.9
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 4.9e-68 263.8 330 58.5
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.1e-64 252.7 261 52.5
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 2.4e-62 245.0 970 30.8
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-61 241.9 265 46.8
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.4e-61 241.1 411 47.2
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 4.9e-60 237.3 321 51.4
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.1e-59 236.1 329 49.5
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.0e-53 215.3 192 60.4
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.3e-52 212.6 296 51.4
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.8e-46 192.2 1147 24.8
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 4.6e-42 177.6 389 41.1
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.1e-30 139.8 692 27.3
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.5e-27 128.6 324 42.9
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 5.5e-27 127.5 787 25.0
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.9e-25 121.3 135 53.3
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 4.4e-24 117.9 98 62.2
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.7e-24 116.7 135 52.6
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.0e-22 110.5 96 62.5
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.2e-21 109.8 113 55.8
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.5e-21 109.4 128 52.3
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 2.6e-21 108.6 92 60.9
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 7.7e-21 107.1 345 34.5
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.3e-20 106.3 108 56.5
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.3e-20 106.3 92 60.9
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.9e-20 105.1 137 47.4
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.5e-19 102.1 115 51.3
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 4.2e-19 101.3 252 35.7
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 4.5e-13 81.3 69 58.0
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 6.5e-12 77.4 207 29.5
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.7e-10 71.2 54 66.7
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.3e-09 68.9 58 56.9
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.2e-08 66.6 69 60.9
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.4e-08 65.1 54 64.8
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.4e-08 64.7 83 43.4
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.8e-08 63.5 47 72.3
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 1.4e-06 59.7 95 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 1.8e-06 59.3 93 44.1
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.8e-06 59.3 93 43.0
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.4e-06 57.8 58 60.3


User provided reference genes

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