Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 4.3e-288 994.2 592 100.0
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.3e-271 939.5 574 96.3
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-257 892.9 577 90.6
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 4.5e-221 771.5 575 79.7
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 5.5e-219 764.6 578 79.6
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.6e-202 709.9 574 73.9
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 1.4e-201 706.8 587 71.2
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 3.1e-201 705.7 575 72.3
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 1.6e-189 666.8 574 70.7
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.2e-186 657.1 577 69.8
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 4.5e-168 595.5 588 66.3
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 9.0e-161 571.2 581 55.9
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 3.4e-160 569.3 574 57.3
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.9e-156 555.8 579 64.6
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 7.4e-155 551.6 584 59.8
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.5e-152 543.9 591 58.5
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.5e-152 543.9 590 57.1
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 7.6e-152 541.6 611 61.5
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 7.6e-152 541.6 584 56.8
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 5.5e-150 535.4 616 56.8
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 5.5e-150 535.4 575 56.7
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 6.1e-149 531.9 578 59.0
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.0e-148 531.2 582 58.2
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.5e-147 526.6 577 58.1
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 4.3e-147 525.8 578 59.2
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 7.4e-147 525.0 578 57.1
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 2.6e-144 516.5 583 59.3
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 8.5e-143 511.5 618 54.4
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.2e-142 509.6 577 52.2
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 3.2e-142 509.6 572 54.5
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 4.2e-142 509.2 591 58.4
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 2.1e-141 506.9 582 52.2
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 1.7e-138 497.3 593 53.6
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 1.7e-138 497.3 590 52.2
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 8.2e-138 495.0 575 53.4
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.8e-137 493.8 581 53.0
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.3e-137 492.3 572 54.2
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 6.9e-137 491.9 583 53.3
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.1e-137 491.5 588 53.1
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.5e-136 490.7 580 58.1
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 3.4e-136 489.6 592 55.4
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.7e-136 488.4 585 53.7
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 8.5e-135 485.0 585 55.2
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 4.7e-133 479.2 581 50.8
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.7e-133 479.2 580 50.7
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 6.1e-133 478.8 589 56.4
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 6.1e-133 478.8 572 55.6
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 6.1e-133 478.8 587 51.6
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 3.9e-132 476.1 582 57.9
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 2.6e-131 473.4 588 51.5
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.6e-131 473.4 596 53.0
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 2.6e-131 473.4 588 52.6
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 3.3e-131 473.0 575 52.5
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 5.7e-131 472.2 588 51.0
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 5.7e-131 472.2 585 53.3
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.3e-130 471.1 596 50.3
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.1e-129 468.0 581 50.6
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.1e-129 468.0 588 51.4
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 3.1e-129 466.5 594 48.7
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 5.3e-129 465.7 588 51.0
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 2.9e-127 459.9 585 51.3
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 5.5e-126 455.7 266 85.7
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 1.2e-125 454.5 584 53.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 1.5e-123 447.6 582 52.7
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.0e-123 447.2 574 52.1
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.6e-123 446.8 583 49.4
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 3.3e-123 446.4 583 52.0
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 3.3e-123 446.4 585 47.7
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 1.1e-121 441.4 583 50.3
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.4e-121 441.0 583 49.2
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.4e-121 441.0 585 49.7
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 1.8e-121 440.7 644 47.7
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 2.4e-121 440.3 583 50.8
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 3.1e-121 439.9 585 49.7
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 5.3e-121 439.1 583 50.3
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 5.3e-121 439.1 583 53.0
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.6e-120 436.8 586 50.2
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 3.5e-120 436.4 583 49.2
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 3.5e-120 436.4 583 47.9
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 5.9e-120 435.6 577 51.6
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.9e-119 433.3 586 47.3
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 6.5e-119 432.2 582 53.1
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 8.5e-119 431.8 583 49.4
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.5e-118 430.3 586 44.2
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.0e-117 425.2 583 46.0
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 8.0e-117 425.2 586 45.2
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 5.7e-115 419.1 522 55.0
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 2.8e-114 416.8 576 48.8
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 4.8e-114 416.0 608 48.8
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 8.3e-114 415.2 576 46.5
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 3.1e-113 413.3 595 48.1
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 4.1e-113 412.9 589 45.5
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 9.1e-113 411.8 586 50.2
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.9e-111 406.8 588 50.5
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 4.0e-108 396.4 586 47.1
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 8.8e-108 395.2 582 45.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.8e-97 360.9 582 44.2
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 9.2e-97 358.6 621 44.8
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.6e-95 352.1 503 49.7
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 1.6e-93 347.8 212 82.1
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 6.1e-93 345.9 612 44.9
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.9e-89 334.3 596 42.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 3.1e-84 317.0 518 45.0
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.9e-70 271.2 430 46.0
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.4e-67 260.0 443 43.8
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 2.1e-64 251.1 647 36.5
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 3.6e-61 240.4 284 59.9
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.1e-60 238.8 418 45.7
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.7e-55 221.5 201 59.7
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.1e-52 210.7 307 49.8
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.1e-38 165.6 463 33.9
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.2e-35 155.6 123 74.0
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 6.7e-31 139.8 566 28.1
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 2.4e-28 131.3 240 30.4
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.3e-26 125.6 328 43.3
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 2.7e-24 117.9 98 62.2
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.9e-23 114.0 110 60.0
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 7.4e-22 109.8 113 55.8
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 8.2e-21 106.3 108 56.5
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 3.1e-20 104.4 356 33.7
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.3e-18 99.0 509 25.5
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.0e-15 89.4 73 68.5
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.1e-14 85.9 92 44.6
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 4.4e-14 84.0 539 24.3
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 5.3e-12 77.0 91 46.2
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.1e-09 69.3 185 38.4
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.7e-08 64.7 83 43.4
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 8.8e-07 59.7 95 45.3


User provided reference genes

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