Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 2.9e-67 258.5 135 100.0
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 1.2e-47 193.4 127 83.5
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.4e-45 185.7 125 80.8
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 2.7e-44 182.2 128 78.1
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 2.3e-43 179.1 124 79.0
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 1.5e-42 176.4 125 74.4
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.6e-41 172.9 130 74.6
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 4.7e-41 171.4 126 75.4
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 1.4e-40 169.9 125 76.8
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 8.4e-38 160.6 126 68.3
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.9e-37 159.5 122 69.7
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 4.1e-37 158.3 125 70.4
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 4.1e-37 158.3 122 68.9
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 7.1e-37 157.5 117 70.1
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 9.2e-37 157.1 116 72.4
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 9.2e-37 157.1 124 70.2
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.6e-36 156.4 122 68.9
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 2.7e-36 155.6 115 68.7
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 7.8e-36 154.1 124 67.7
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 1.7e-35 152.9 116 69.8
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 2.3e-35 152.5 126 65.9
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 6.6e-35 151.0 117 69.2
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 6.6e-35 151.0 125 64.8
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 6.6e-35 151.0 126 70.6
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 1.1e-34 150.2 116 68.1
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 1.5e-34 149.8 117 68.4
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 4.3e-34 148.3 114 69.3
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 5.6e-34 147.9 124 65.3
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 9.6e-34 147.1 116 68.1
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 4.7e-33 144.8 124 62.9
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 8.1e-33 144.1 117 65.8
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 8.1e-33 144.1 121 63.6
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 1.1e-32 143.7 134 59.7
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.4e-32 143.3 134 62.7
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.4e-32 143.3 132 60.6
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 1.4e-32 143.3 124 63.7
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 6.9e-32 141.0 117 64.1
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 9.9e-31 137.1 123 64.2
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 9.9e-31 137.1 116 63.8
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 2.9e-30 135.6 125 62.4
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 2.9e-30 135.6 121 62.0
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 8.4e-30 134.0 114 64.9
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.1e-29 133.7 113 63.7
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 3.2e-29 132.1 116 61.2
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 3.2e-29 132.1 123 60.2
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 4.2e-29 131.7 118 59.3
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 7.1e-29 131.0 123 61.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 7.1e-29 131.0 119 62.2
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.2e-28 130.2 134 55.2
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 1.2e-28 130.2 117 62.4
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.6e-28 129.8 119 58.0
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 2.1e-28 129.4 121 57.0
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 2.7e-28 129.0 117 57.3
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 2.7e-28 129.0 126 60.3
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.7e-28 129.0 133 56.4
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 4.6e-28 128.3 119 58.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.0e-28 127.9 117 59.0
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 7.8e-28 127.5 123 61.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.3e-27 126.7 122 61.5
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.3e-27 126.7 124 58.9
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.3e-27 126.7 105 61.9
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.7e-27 126.3 122 60.7
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 1.7e-27 126.3 123 60.2
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 3.0e-27 125.6 117 58.1
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 3.9e-27 125.2 105 64.8
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 3.9e-27 125.2 124 56.5
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 8.7e-27 124.0 124 56.5
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 8.7e-27 124.0 118 60.2
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 8.7e-27 124.0 118 61.0
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 7.3e-26 120.9 123 55.3
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 1.3e-25 120.2 81 75.3
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.8e-25 118.2 125 56.8
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 4.8e-25 118.2 126 53.2
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 6.2e-25 117.9 81 74.1
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 8.1e-25 117.5 118 58.5
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 4.0e-24 115.2 121 52.1
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 6.9e-24 114.4 120 57.5
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.2e-23 113.6 115 59.1
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.5e-23 113.2 121 54.5
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.2e-22 109.4 116 56.0
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 8.4e-22 107.5 113 59.3
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.1e-21 107.1 127 52.0
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 1.9e-21 106.3 105 55.2
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 3.2e-21 105.5 134 49.3
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 4.2e-21 105.1 109 51.4
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 7.1e-21 104.4 125 52.0
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 7.1e-21 104.4 125 52.0
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 9.3e-21 104.0 112 56.2
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.6e-20 103.2 126 51.6
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 3.5e-20 102.1 128 50.0
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 7.9e-20 100.9 123 53.7
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 7.9e-20 100.9 123 53.7
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 7.9e-20 100.9 123 53.7
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.8e-19 99.8 117 47.9
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 2.3e-19 99.4 128 49.2
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 2.3e-19 99.4 167 40.1
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.0e-19 99.0 109 55.0
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 8.7e-19 97.4 122 50.8
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.1e-18 97.1 68 72.1
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 6.2e-17 91.3 119 50.4
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 1.8e-16 89.7 116 45.7
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.0e-15 86.3 113 51.3
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 3.4e-15 85.5 122 45.1
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 3.4e-15 85.5 122 45.1
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.7e-14 83.2 65 61.5
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 3.8e-14 82.0 86 59.3
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 3.8e-14 82.0 106 48.1
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 4.9e-14 81.6 117 47.0
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 4.9e-14 81.6 122 45.9
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 4.9e-14 81.6 123 45.5
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 4.2e-13 78.6 104 47.1
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 5.3e-08 61.6 48 62.5
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 3.4e-07 58.9 118 35.6
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 4.5e-07 58.5 49 61.2
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 5.8e-07 58.2 27 96.3
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 2.2e-06 56.2 86 50.0
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 2.9e-06 55.8 50 48.0
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 6.5e-06 54.7 47 55.3
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 6.5e-06 54.7 50 54.0
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 6.5e-06 54.7 47 55.3
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 8.4e-06 54.3 61 42.6


User provided reference genes

Program Settings