Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 7.5e-138 493.8 244 100.0
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 7.8e-127 457.2 244 90.6
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 1.4e-123 446.4 240 88.8
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 1.8e-123 446.0 243 88.5
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 1.2e-116 423.3 240 81.2
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 3.6e-116 421.8 240 82.5
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 1.8e-115 419.5 240 81.2
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 4.9e-113 411.4 237 81.4
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 1.2e-111 406.8 240 80.0
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 2.7e-111 405.6 240 80.0
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 1.9e-109 399.4 240 79.2
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 6.9e-107 391.0 240 77.1
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 1.3e-102 376.7 240 75.8
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 3.9e-102 375.2 239 74.1
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 6.7e-102 374.4 240 75.0
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 1.1e-101 373.6 240 73.3
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 2.5e-101 372.5 240 72.5
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 2.5e-101 372.5 240 73.3
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 4.3e-101 371.7 240 72.9
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 1.6e-100 369.8 240 74.2
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 2.8e-100 369.0 241 74.7
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 4.8e-100 368.2 240 72.1
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 8.1e-100 367.5 237 74.7
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 1.4e-99 366.7 240 72.9
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 2.4e-99 365.9 240 72.9
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 4.0e-99 365.2 240 71.2
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 5.3e-99 364.8 240 72.5
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 6.9e-99 364.4 238 73.5
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 6.9e-99 364.4 240 72.5
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 1.2e-98 363.6 239 72.8
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 4.5e-98 361.7 240 72.1
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 2.9e-97 359.0 240 70.4
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 3.8e-97 358.6 240 71.7
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 8.4e-97 357.5 239 69.5
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.4e-96 356.7 240 72.1
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 1.4e-96 356.7 243 70.4
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 1.4e-96 356.7 286 63.3
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 1.9e-96 356.3 240 72.1
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 2.4e-96 355.9 244 69.3
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 3.2e-96 355.5 239 69.9
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 5.5e-96 354.8 240 71.7
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 4.6e-95 351.7 240 67.5
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 1.0e-94 350.5 240 69.2
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 1.0e-94 350.5 239 69.0
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.1e-93 347.1 240 69.6
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 2.5e-93 345.9 239 69.5
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 3.3e-93 345.5 242 68.2
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 4.3e-93 345.1 254 67.7
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 7.4e-93 344.4 240 70.0
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 9.6e-93 344.0 243 67.9
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 3.7e-92 342.0 240 66.7
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 4.8e-92 341.7 240 68.8
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 8.2e-92 340.9 240 66.7
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.4e-91 340.1 240 66.7
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 2.4e-91 339.3 239 67.8
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 4.0e-91 338.6 240 66.7
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 4.0e-91 338.6 237 69.2
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 6.9e-91 337.8 240 66.2
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 1.2e-90 337.0 240 67.9
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.5e-90 336.7 240 66.2
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 2.0e-90 336.3 239 65.3
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 2.6e-90 335.9 240 67.9
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 3.4e-90 335.5 244 66.0
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 1.0e-89 334.0 241 67.2
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 1.7e-89 333.2 236 66.9
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 2.9e-89 332.4 240 67.9
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 3.8e-89 332.0 246 66.3
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 6.5e-89 331.3 236 66.5
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 2.5e-88 329.3 237 70.5
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 3.0e-86 322.4 240 64.6
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 5.1e-86 321.6 243 63.4
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 1.5e-85 320.1 238 64.7
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 2.5e-85 319.3 246 64.6
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 5.7e-85 318.2 242 62.4
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 7.4e-85 317.8 243 63.0
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 1.2e-82 310.5 225 64.0
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.4e-82 308.9 235 61.7
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 3.4e-82 308.9 240 60.8
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 1.0e-81 307.4 242 61.6
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 1.7e-81 306.6 240 60.8
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 3.2e-80 302.4 278 55.0
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 9.4e-80 300.8 240 59.6
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 6.7e-78 294.7 237 59.5
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 7.4e-77 291.2 184 70.1
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 2.2e-76 289.7 240 62.5
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 8.5e-73 277.7 184 69.0
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 7.9e-71 271.2 183 69.4
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 1.7e-68 263.5 183 68.9
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.7e-68 263.5 233 53.6
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 2.2e-68 263.1 183 69.4
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 2.8e-68 262.7 233 53.6
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 9.1e-67 257.7 183 66.1
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 9.1e-67 257.7 182 69.8
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 1.2e-63 247.3 183 66.1
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 1.0e-62 244.2 229 50.2
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 1.1e-61 240.7 240 48.3
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 3.3e-61 239.2 241 45.6
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 6.3e-60 235.0 230 50.9
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 5.3e-59 231.9 181 61.3
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 5.0e-57 225.3 232 48.3
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 5.5e-56 221.9 189 60.8
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 4.7e-55 218.8 205 50.7
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 7.5e-53 211.5 238 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 5.3e-51 205.3 216 47.2
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 7.0e-51 204.9 179 59.8
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 5.0e-49 198.7 148 58.1
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 1.7e-44 183.7 110 75.5
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 2.1e-39 166.8 180 43.9
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 1.4e-38 164.1 184 46.7
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 5.4e-35 152.1 240 42.5
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 2.5e-32 143.3 211 35.1
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 4.6e-26 122.5 106 60.4
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 1.2e-21 107.8 242 26.9


User provided reference genes

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