Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.1e-53 213.0 108 100.0
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 3.4e-50 201.4 108 95.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 7.6e-50 200.3 108 92.6
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 9.3e-48 193.4 108 90.7
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.7e-47 191.8 108 89.8
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 8.7e-46 186.8 108 88.0
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.1e-37 159.8 108 74.1
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 2.5e-37 158.7 108 74.1
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 3.3e-37 158.3 108 73.1
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 73.1
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 72.2
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 74.1
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.9e-34 147.5 108 66.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 5.0e-33 144.4 108 66.7
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 65.7
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 64.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 66.7
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 7.2e-32 140.6 108 65.7
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.2e-31 139.8 108 64.8
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 63.9
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 63.9
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 6.1e-31 137.5 108 62.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.4e-30 136.3 108 63.0
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.8e-30 136.0 108 63.9
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 63.9
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 3.9e-30 134.8 107 67.3
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 60.2
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 6.7e-30 134.0 108 63.9
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 8.8e-30 133.7 108 61.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 61.1
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 62.0
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 60.2
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 59.3
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 62.0
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 59.3
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 62.0
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 7.4e-29 130.6 108 63.0
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 58.3
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 60.2
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 61.1
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 58.3
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 59.3
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 58.3
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.2e-28 129.0 108 59.3
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 2.2e-28 129.0 108 61.1
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.8e-28 128.6 108 57.4
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 2.8e-28 128.6 108 59.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 4.8e-28 127.9 108 60.2
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 6.3e-28 127.5 108 58.3
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 6.3e-28 127.5 108 57.4
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 8.2e-28 127.1 108 59.3
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 60.2
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.4e-27 126.3 108 62.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 57.4
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 58.3
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 58.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 56.5
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 58.3
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 56.5
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 57.4
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 57.4
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 4.1e-27 124.8 108 59.3
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 58.3
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 58.3
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 9.1e-27 123.6 108 55.6
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.1e-27 123.6 108 56.5
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.1e-27 123.6 108 57.4
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 57.4
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 57.4
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 57.4
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 57.4
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 57.4
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.5e-26 122.9 109 57.8
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 57.4
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.0e-26 122.5 104 60.6
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.6e-26 122.1 108 53.7
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.6e-26 122.1 108 55.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.6e-26 122.1 109 59.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 2.6e-26 122.1 108 55.6
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 55.6
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.4e-26 121.7 109 57.8
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 4.5e-26 121.3 109 57.8
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 5.9e-26 120.9 108 55.6
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 7.7e-26 120.6 108 55.6
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.0e-25 120.2 109 57.8
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.0e-25 120.2 109 57.8
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.0e-25 120.2 108 54.6
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.0e-25 120.2 108 55.6
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.0e-25 120.2 108 57.4
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.0e-25 120.2 108 54.6
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 56.5
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.7e-25 119.4 108 55.6
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.7e-25 119.4 107 56.1
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 58.3
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 55.6
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 57.4
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 2.9e-25 118.6 108 55.6
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 2.9e-25 118.6 108 55.6
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 2.9e-25 118.6 108 53.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 6.5e-25 117.5 108 53.7
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 6.5e-25 117.5 109 55.0
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-24 116.7 109 55.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 1.4e-24 116.3 107 54.2
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.4e-24 116.3 109 57.8
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.4e-24 116.3 108 53.7
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 5.5e-24 114.4 104 53.8
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 9.4e-24 113.6 108 55.6
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.2e-23 113.2 108 50.9
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 2.1e-23 112.5 108 52.8
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 7.9e-23 110.5 100 60.0
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.0e-22 110.2 99 55.6
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.4e-22 109.8 108 49.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.3e-22 109.0 96 57.3
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 2.3e-22 109.0 108 49.1
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.3e-22 109.0 108 51.9
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.3e-22 109.0 111 53.2
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.0e-21 105.9 86 62.8
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.6e-21 105.5 97 59.8
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.3e-21 105.1 108 50.0
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.3e-20 103.2 90 58.9
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 2.2e-20 102.4 87 59.8
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.8e-20 102.1 92 57.6
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.8e-20 102.1 85 60.0
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 4.8e-20 101.3 108 50.0
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.8e-20 101.3 86 60.5
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 6.3e-20 100.9 91 58.2
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 8.2e-20 100.5 108 51.9
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 8.2e-20 100.5 85 60.0
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.1e-19 100.1 90 58.9
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.4e-19 99.8 86 55.8
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.1e-19 98.2 87 57.5
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.1e-19 98.2 105 46.7
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 9.1e-19 97.1 87 57.5
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 9.1e-19 97.1 103 51.5
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 3.4e-18 95.1 94 53.2
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 4.5e-18 94.7 86 58.1
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 4.5e-18 94.7 86 58.1
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 1.7e-17 92.8 87 54.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.7e-17 92.8 86 53.5
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.2e-17 92.4 95 51.6
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 2.5e-16 89.0 108 41.7
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 4.2e-16 88.2 106 36.8
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 9.4e-16 87.0 87 50.6
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.2e-15 86.7 104 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.2e-15 86.7 104 44.2
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.2e-15 86.7 94 45.7
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 5.2e-14 81.3 66 60.6
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 8.8e-14 80.5 88 53.4
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 7.4e-13 77.4 112 42.9
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 9.7e-13 77.0 71 49.3
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 8.2e-12 73.9 109 37.6
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-11 73.2 66 54.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 5.3e-11 71.2 94 42.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 1.7e-09 66.2 109 37.6
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 2.2e-09 65.9 72 44.4
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 2.2e-09 65.9 72 44.4
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.9e-09 65.5 87 47.1
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 2.5e-08 62.4 57 52.6


User provided reference genes

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