Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g110530 Medicago truncatula HOM05D000385 ORTHO05D000269 7.5e-61 236.9 110 100.0
Lj1g0018775 Lotus japonicus HOM05D000385 ORTHO05D000269 1.2e-18 96.7 103 45.6
TPR.G9598 Trifolium pratense HOM05D000385 ORTHO05D000269 1.6e-18 96.3 159 42.1
Psat3g023080 Pisum sativum HOM05D000385 ORTHO05D000269 2.3e-17 92.4 101 46.5
Glyma.03G212000 Glycine max HOM05D000385 ORTHO05D000269 8.7e-17 90.5 49 75.5
arahy.Tifrunner.gnm1.ann1.F4BP1L Arachis hypogaea HOM05D000385 ORTHO05D000269 9.0e-14 80.5 48 72.9
VMungo1383G2808 Vigna mungo HOM05D000385 ORTHO05D000269 2.6e-13 79.0 49 67.3
arahy.Tifrunner.gnm1.ann1.Y7FF37 Arachis hypogaea HOM05D000385 ORTHO05D000269 4.4e-13 78.2 48 70.8
Dinv15821 Davidia involucrata HOM05D000385 ORTHO05D000269 1.2e-10 70.1 120 35.0
Nn3g21881 Nelumbo nucifera HOM05D000385 ORTHO05D000269 7.8e-10 67.4 98 35.7
CANSAT01G2379 Cannabis sativa HOM05D000385 ORTHO05D000269 1.3e-09 66.6 48 58.3
TWI53G1525 Tripterygium wilfordii HOM05D000385 ORTHO05D000269 3.0e-09 65.5 105 36.2
Dinv15823 Davidia involucrata HOM05D000385 ORTHO05D000269 6.6e-09 64.3 97 37.1
CANSAT01G2486 Cannabis sativa HOM05D000385 ORTHO05D000269 1.1e-08 63.5 48 50.0
CSS0049074 Camellia sinensis var. sinensis HOM05D000385 ORTHO05D000269 1.5e-08 63.2 50 54.0
Hma1.2p1_0784F.1_g217320 Hydrangea macrophylla HOM05D000385 ORTHO05D000269 1.5e-08 63.2 48 52.1
Dinv09547 Davidia involucrata HOM05D000385 ORTHO05D000269 2.5e-08 62.4 106 32.1
QL04p066709 Quercus lobata HOM05D000385 ORTHO05D000269 2.5e-08 62.4 99 34.3
Haze_08337 Corylus avellana HOM05D000385 ORTHO05D000269 3.3e-08 62.0 48 54.2
Lj9A330G7 Lonicera japonica HOM05D000385 ORTHO05D000269 3.3e-08 62.0 50 58.0
Lj9A332G18 Lonicera japonica HOM05D000385 ORTHO05D000269 3.3e-08 62.0 50 58.0
QL04p033651 Quercus lobata HOM05D000385 ORTHO05D000269 3.3e-08 62.0 100 37.0
Dinv15819 Davidia involucrata HOM05D000385 ORTHO05D000269 4.3e-08 61.6 51 51.0
Lj6A119G5 Lonicera japonica HOM05D000385 ORTHO05D000269 4.3e-08 61.6 99 34.3
Nn8g39942 Nelumbo nucifera HOM05D000385 ORTHO05D000269 4.3e-08 61.6 105 31.4
QL04p033624 Quercus lobata HOM05D000385 ORTHO05D000269 4.3e-08 61.6 99 34.3
Aqoxy2G03807 Aquilegia oxysepala HOM05D000385 ORTHO05D000269 5.6e-08 61.2 101 34.7
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 5.6e-08 61.2 105 34.3
Potri.014G055400 Populus trichocarpa HOM05D000385 ORTHO05D000269 7.3e-08 60.8 105 33.3
Sabra01G0101100 Salix brachista HOM05D000385 ORTHO05D000269 7.3e-08 60.8 100 38.0
arahy.Tifrunner.gnm1.ann1.ZP3GRT Arachis hypogaea HOM05D000385 ORTHO05D000269 9.6e-08 60.5 105 33.3
CSS0041123 Camellia sinensis var. sinensis HOM05D000385 ORTHO05D000269 9.6e-08 60.5 98 35.7
Sed0012049 Sechium edule HOM05D000385 ORTHO05D000269 9.6e-08 60.5 48 47.9
AUR62024901 Chenopodium quinoa HOM05D000385 ORTHO05D000269 1.3e-07 60.1 48 47.9
Dinv15824 Davidia involucrata HOM05D000385 ORTHO05D000269 1.3e-07 60.1 122 31.1
Potri.001G130700 Populus trichocarpa HOM05D000385 ORTHO05D000269 1.3e-07 60.1 113 35.4
QL04p040449 Quercus lobata HOM05D000385 ORTHO05D000269 1.3e-07 60.1 100 32.0
PGSC0003DMG400041725 Solanum tuberosum HOM05D000385 ORTHO05D000269 1.3e-07 60.1 98 33.7
vmacro01952 Vaccinium macrocarpon HOM05D000385 ORTHO05D000269 1.3e-07 60.1 100 39.0
CSS0047772 Camellia sinensis var. sinensis HOM05D000385 ORTHO05D000269 1.6e-07 59.7 98 33.7
Eucgr.K00593 Eucalyptus grandis HOM05D000385 ORTHO05D000269 1.6e-07 59.7 49 51.0
Sed0018106 Sechium edule HOM05D000385 ORTHO05D000269 1.6e-07 59.7 49 44.9
Dinv15825 Davidia involucrata HOM05D000385 ORTHO05D000269 2.1e-07 59.3 95 34.7
QL04p033916 Quercus lobata HOM05D000385 ORTHO05D000269 2.1e-07 59.3 100 35.0
Atru.chr5.1218 Acer truncatum HOM05D000385 ORTHO05D000269 2.8e-07 58.9 48 50.0
CANSAT54G2731 Cannabis sativa HOM05D000385 ORTHO05D000269 2.8e-07 58.9 50 48.0
AUR62030639 Chenopodium quinoa HOM05D000385 ORTHO05D000269 2.8e-07 58.9 48 47.9
Eucgr.K00598 Eucalyptus grandis HOM05D000385 ORTHO05D000269 2.8e-07 58.9 48 52.1
Thecc.01G388500 Theobroma cacao HOM05D000385 ORTHO05D000269 2.8e-07 58.9 98 31.6
Eucgr.K00602 Eucalyptus grandis HOM05D000385 ORTHO05D000269 3.6e-07 58.5 48 54.2
Eucgr.K00609 Eucalyptus grandis HOM05D000385 ORTHO05D000269 3.6e-07 58.5 96 33.3
QL04p034544 Quercus lobata HOM05D000385 ORTHO05D000269 3.6e-07 58.5 105 30.5
Dinv15829 Davidia involucrata HOM05D000385 ORTHO05D000269 4.8e-07 58.2 106 31.1
Thhalv10028326m.g Eutrema salsugineum HOM05D000385 ORTHO05D000269 4.8e-07 58.2 96 30.2
QL04p033613 Quercus lobata HOM05D000385 ORTHO05D000269 4.8e-07 58.2 51 49.0
QL04p033804 Quercus lobata HOM05D000385 ORTHO05D000269 4.8e-07 58.2 100 35.0
CsaV3_5G024440 Cucumis sativus L. HOM05D000385 ORTHO05D000269 6.2e-07 57.8 48 47.9
Eucgr.K00614 Eucalyptus grandis HOM05D000385 ORTHO05D000269 6.2e-07 57.8 96 33.3
Eucgr.K00617 Eucalyptus grandis HOM05D000385 ORTHO05D000269 6.2e-07 57.8 48 50.0
Potri.003G103200 Populus trichocarpa HOM05D000385 ORTHO05D000269 6.2e-07 57.8 97 37.1
Potri.008G199400 Populus trichocarpa HOM05D000385 ORTHO05D000269 6.2e-07 57.8 51 52.9
CiPaw.02G017800 Carya illinoinensis HOM05D000385 ORTHO05D000269 8.1e-07 57.4 49 44.9
Ciclev10010197m.g Citrus clementina HOM05D000385 ORTHO05D000269 8.1e-07 57.4 48 45.8
CsaV3_5G024430 Cucumis sativus L. HOM05D000385 ORTHO05D000269 8.1e-07 57.4 48 41.7
Eucgr.K00592 Eucalyptus grandis HOM05D000385 ORTHO05D000269 8.1e-07 57.4 99 33.3
Hma1.2p1_2342F.1_g320370 Hydrangea macrophylla HOM05D000385 ORTHO05D000269 8.1e-07 57.4 95 33.7
QL04p034500 Quercus lobata HOM05D000385 ORTHO05D000269 8.1e-07 57.4 98 30.6
Thecc.01G388400 Theobroma cacao HOM05D000385 ORTHO05D000269 8.1e-07 57.4 50 46.0
Thecc.04G006300 Theobroma cacao HOM05D000385 ORTHO05D000269 8.1e-07 57.4 106 29.2
ECA233G3744 Erigeron canadensis HOM05D000385 ORTHO05D000269 1.1e-06 57.0 108 31.5
Lalb_Chr07g0181801 Lupinus albus HOM05D000385 ORTHO05D000269 1.1e-06 57.0 105 33.3
PGR004G2128 Punica granatum HOM05D000385 ORTHO05D000269 1.1e-06 57.0 44 54.5
Actinidia32238 Actinidia chinensis HOM05D000385 ORTHO05D000269 1.4e-06 56.6 48 45.8
Eucgr.K00603 Eucalyptus grandis HOM05D000385 ORTHO05D000269 1.4e-06 56.6 48 47.9
Lj5P357T2 Lonicera japonica HOM05D000385 ORTHO05D000269 1.4e-06 56.6 90 35.6
Peaxi162Scf00688g00024 Petunia axillaris HOM05D000385 ORTHO05D000269 1.4e-06 56.6 48 45.8
THA.LOC104802613 Tarenaya hassleriana HOM05D000385 ORTHO05D000269 1.4e-06 56.6 103 30.1
Actinidia09159 Actinidia chinensis HOM05D000385 ORTHO05D000269 1.8e-06 56.2 48 43.8
CARHR065150 Cardamine hirsuta HOM05D000385 ORTHO05D000269 1.8e-06 56.2 47 46.8
Cpa.g.sc146.37 Carica papaya HOM05D000385 ORTHO05D000269 1.8e-06 56.2 105 33.3
CiPaw.02G017900 Carya illinoinensis HOM05D000385 ORTHO05D000269 1.8e-06 56.2 48 45.8
COL.COLO4_29066 Corchorus olitorius HOM05D000385 ORTHO05D000269 1.8e-06 56.2 100 35.0
Eucgr.K00611 Eucalyptus grandis HOM05D000385 ORTHO05D000269 1.8e-06 56.2 48 50.0
Lj3C839G18 Lonicera japonica HOM05D005582 ORTHO05D007028 1.8e-06 56.2 106 30.2
GSVIVG01037804001 Vitis vinifera HOM05D000385 ORTHO05D000269 1.8e-06 56.2 117 31.6
Aqoxy7G03564 Aquilegia oxysepala HOM05D000385 ORTHO05D000269 2.4e-06 55.8 50 48.0
Cc00_g07490 Coffea canephora HOM05D000385 ORTHO05D000269 2.4e-06 55.8 105 33.3
Dinv33026 Davidia involucrata HOM05D000385 ORTHO05D000269 2.4e-06 55.8 33 63.6
Eucgr.K00608 Eucalyptus grandis HOM05D000385 ORTHO05D000269 2.4e-06 55.8 48 50.0
Lj5P356T2 Lonicera japonica HOM05D000385 ORTHO05D000269 2.4e-06 55.8 98 34.7
Nn2g12416 Nelumbo nucifera HOM05D000385 ORTHO05D000269 2.4e-06 55.8 50 46.0
QL12p014723 Quercus lobata HOM05D000385 ORTHO05D000269 2.4e-06 55.8 100 34.0
Actinidia32241 Actinidia chinensis HOM05D000385 ORTHO05D000269 3.1e-06 55.5 48 45.8
BolC3t17399H Brassica oleracea HOM05D000385 ORTHO05D000269 3.1e-06 55.5 98 32.7
Ciclev10003602m.g Citrus clementina HOM05D000385 ORTHO05D000269 3.1e-06 55.5 105 31.4
Cc08_g04770 Coffea canephora HOM05D000385 ORTHO05D000269 3.1e-06 55.5 100 32.0
Haze_25391 Corylus avellana HOM05D000385 ORTHO05D000269 3.1e-06 55.5 51 47.1
Duzib264G0238 Durio zibethinus HOM05D000385 ORTHO05D000269 3.1e-06 55.5 105 28.6
Eucgr.K00615 Eucalyptus grandis HOM05D000385 ORTHO05D000269 3.1e-06 55.5 48 50.0
Manes.10G107001 Manihot esculenta HOM05D000385 ORTHO05D000269 3.1e-06 55.5 98 32.7
QL04p033589 Quercus lobata HOM05D000385 ORTHO05D000269 3.1e-06 55.5 50 48.0
Thecc.04G310700 Theobroma cacao HOM05D000385 ORTHO05D000269 3.1e-06 55.5 107 33.6
vmacro02478 Vaccinium macrocarpon HOM05D000385 ORTHO05D000269 3.1e-06 55.5 48 45.8
AT3G20370 Arabidopsis thaliana HOM05D000385 ORTHO05D000269 4.0e-06 55.1 47 48.9
CARHR096070 Cardamine hirsuta HOM05D000385 ORTHO05D000269 4.0e-06 55.1 47 48.9
COL.COLO4_12442 Corchorus olitorius HOM05D000385 ORTHO05D000269 4.0e-06 55.1 105 27.6
MELO3C033957.2 Cucumis melo HOM05D000385 ORTHO05D000269 4.0e-06 55.1 48 43.8
Migut.A01077 Erythranthe guttata HOM05D000385 ORTHO05D000269 4.0e-06 55.1 46 52.2
Migut.G01241 Erythranthe guttata HOM05D000385 ORTHO05D000269 4.0e-06 55.1 49 49.0
Eucgr.L02684 Eucalyptus grandis HOM05D000385 ORTHO05D000269 4.0e-06 55.1 48 45.8
AT1G65370 Arabidopsis thaliana HOM05D000385 ORTHO05D000269 5.3e-06 54.7 47 42.6
EL10Ac9g22247 Beta vulgaris HOM05D000385 ORTHO05D000269 5.3e-06 54.7 48 43.8
A07p36050 Brassica napus HOM05D000385 ORTHO05D000269 5.3e-06 54.7 47 46.8
BraA07t31185Z Brassica rapa HOM05D000385 ORTHO05D000269 5.3e-06 54.7 47 46.8
CANSAT21G1609 Cannabis sativa HOM05D000385 ORTHO05D000269 5.3e-06 54.7 49 49.0
Migut.A00991 Erythranthe guttata HOM05D000385 ORTHO05D000269 5.3e-06 54.7 46 50.0
Peaxi162Scf00688g10013 Petunia axillaris HOM05D000385 ORTHO05D000269 5.3e-06 54.7 48 47.9
Potri.008G099600 Populus trichocarpa HOM05D000385 ORTHO05D000269 5.3e-06 54.7 105 33.3
Sp3g18395 Schrenkiella parvula HOM05D000385 ORTHO05D000269 5.3e-06 54.7 47 48.9
GSVIVG01037805001 Vitis vinifera HOM05D000385 ORTHO05D000269 5.3e-06 54.7 48 47.9
AL4G22840 Arabidopsis lyrata HOM05D000385 ORTHO05D000269 6.9e-06 54.3 71 35.2
Cpa.g.sc271.7 Carica papaya HOM05D000385 ORTHO05D000269 6.9e-06 54.3 45 51.1
AUR62024900 Chenopodium quinoa HOM05D000385 ORTHO05D000269 6.9e-06 54.3 48 39.6
Ciclev10001923m.g Citrus clementina HOM05D000385 ORTHO05D000269 6.9e-06 54.3 103 30.1
DCAR_000811 Daucus carota HOM05D000385 ORTHO05D000269 6.9e-06 54.3 47 51.1
FAN01G1306 Fragaria x ananassa HOM05D000385 ORTHO05D000269 6.9e-06 54.3 47 48.9
Lj6A114G12 Lonicera japonica HOM05D000385 ORTHO05D000269 6.9e-06 54.3 118 28.8
QL04p034174 Quercus lobata HOM05D000385 ORTHO05D000269 6.9e-06 54.3 107 32.7
SGA_v2.0_scaffold104G30238 Striga asiatica HOM05D000385 ORTHO05D000269 6.9e-06 54.3 46 54.3
Actinidia01057 Actinidia chinensis HOM05D005582 ORTHO05D007028 9.0e-06 53.9 44 50.0
Aa31LG1G11430 Aethionema arabicum HOM05D000385 ORTHO05D000269 9.0e-06 53.9 96 30.2
BraA03t13326Z Brassica rapa HOM05D000385 ORTHO05D000269 9.0e-06 53.9 47 46.8
CiPaw.01G037900 Carya illinoinensis HOM05D000385 ORTHO05D000269 9.0e-06 53.9 50 50.0
Thhalv10018700m.g Eutrema salsugineum HOM05D000385 ORTHO05D000269 9.0e-06 53.9 47 44.7
Thhalv10020911m.g Eutrema salsugineum HOM05D000385 ORTHO05D000269 9.0e-06 53.9 47 48.9
Peaxi162Scf00688g00023 Petunia axillaris HOM05D000385 ORTHO05D000269 9.0e-06 53.9 66 36.4
Peaxi162Scf00688g00363 Petunia axillaris HOM05D000385 ORTHO05D000269 9.0e-06 53.9 49 44.9
QL04p034264 Quercus lobata HOM05D000385 ORTHO05D000269 9.0e-06 53.9 100 33.0
QL05p003007 Quercus lobata HOM05D000385 ORTHO05D000269 9.0e-06 53.9 50 44.0
TPR.G12612 Trifolium pratense HOM05D000385 ORTHO05D000269 9.0e-06 53.9 105 32.4


User provided reference genes

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