Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g110440 Medicago truncatula HOM05D001070 ORTHO05D002096 1.2e-86 323.2 164 100.0
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 9.7e-73 276.9 191 79.1
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.1e-39 165.2 171 52.6
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 6.6e-37 157.9 173 50.9
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 1.1e-36 157.1 171 50.3
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 1.1e-36 157.1 171 50.3
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 1.5e-36 156.8 173 50.3
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 1.9e-36 156.4 175 50.3
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 1.9e-36 156.4 175 50.3
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 1.9e-36 156.4 175 50.3
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 1.9e-36 156.4 175 50.3
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 1.9e-36 156.4 175 50.3
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 1.9e-36 156.4 175 50.3
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.9e-36 156.4 171 50.3
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.9e-36 156.4 171 50.3
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.9e-36 156.4 171 50.3
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.9e-36 156.4 171 50.3
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.5e-36 156.0 173 50.3
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.5e-36 156.0 180 48.9
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 3.3e-36 155.6 173 50.3
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 5.6e-36 154.8 173 50.3
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 5.6e-36 154.8 173 50.3
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 5.6e-36 154.8 173 50.3
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 5.6e-36 154.8 173 50.3
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 5.6e-36 154.8 173 50.3
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 5.6e-36 154.8 173 50.3
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-36 154.5 174 50.0
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.2e-35 153.7 171 49.1
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 2.8e-35 152.5 171 49.7
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 2.8e-35 152.5 171 49.7
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.0e-35 151.0 173 48.0
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.0e-35 151.0 173 48.0
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.0e-35 151.0 173 48.0
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 6.8e-34 147.9 171 49.7
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.8e-34 147.9 173 47.4
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 1.2e-33 147.1 171 48.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-33 146.7 173 48.0
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-33 146.7 173 48.0
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-33 146.7 173 48.0
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-33 146.7 173 48.0
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-33 146.7 173 48.0
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 4.4e-33 145.2 171 48.5
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 9.8e-33 144.1 182 48.9
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 1.7e-32 143.3 171 48.5
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.9e-32 141.7 171 47.4
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.9e-32 141.7 171 47.4
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.1e-31 140.6 173 45.1
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.4e-31 140.2 173 46.2
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 1.9e-31 139.8 173 47.4
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 5.4e-31 138.3 177 46.9
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 9.2e-31 137.5 175 46.9
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 4.6e-30 135.2 161 46.6
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-29 133.3 143 52.4
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.0e-29 132.5 173 45.7
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 3.9e-29 132.1 170 45.3
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.6e-29 131.3 147 49.0
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 8.6e-29 131.0 161 49.7
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 3.3e-28 129.0 160 45.6
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 4.7e-27 125.2 152 48.0
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 6.8e-26 121.3 161 43.5
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.4e-25 118.6 161 47.8
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.4e-25 118.6 139 48.2
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 9.9e-25 117.5 120 52.5
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 4.9e-24 115.2 178 43.3
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 2.4e-23 112.8 114 51.8
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 4.1e-23 112.1 112 51.8
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 4.1e-23 112.1 112 51.8
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 4.1e-23 112.1 112 51.8
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 4.1e-23 112.1 112 51.8
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 4.1e-23 112.1 115 50.4
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 3.5e-22 109.0 112 51.8
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.0e-21 107.5 112 48.2
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 1.7e-21 106.7 190 34.7
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 2.3e-21 106.3 186 39.2
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 3.0e-21 105.9 110 50.0
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.9e-21 105.5 136 47.1
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 5.1e-21 105.1 119 49.6
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 8.6e-21 104.4 153 41.8
Gohir.D05G248050 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.6e-21 104.4 106 55.7
Gorai.009G258900 Gossypium raimondii HOM05D001070 ORTHO05D002096 8.6e-21 104.4 102 54.9
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 8.6e-21 104.4 119 49.6
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-20 104.0 118 49.2
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 1.9e-20 103.2 112 48.2
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.5e-20 102.8 169 40.2
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 4.3e-20 102.1 127 48.0
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 4.3e-20 102.1 116 49.1
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.5e-20 100.9 118 47.5
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 9.5e-20 100.9 116 48.3
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-19 100.5 106 49.1
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.2e-19 100.5 187 38.5
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-19 99.8 156 42.3
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-19 99.8 156 42.3
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.1e-19 99.8 108 46.3
Hund22091 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-19 99.4 179 36.3
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-19 99.4 188 38.3
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 6.2e-19 98.2 110 49.1
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 6.8e-18 94.7 117 50.4
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 6.8e-18 94.7 117 50.4
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 8.9e-18 94.4 94 53.2
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 8.9e-18 94.4 116 45.7
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 1.2e-17 94.0 103 50.5
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 3.4e-17 92.4 123 44.7
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.4e-17 92.0 152 41.4
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 5.8e-17 91.7 111 48.6
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 9.9e-17 90.9 122 46.7
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.3e-16 90.5 124 46.0
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.3e-16 90.5 124 46.0
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.3e-16 90.5 102 52.0
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.4e-15 87.0 188 36.2
Medtr5g039110 Medicago truncatula HOM05D001070 ORTHO05D002096 4.2e-15 85.5 85 56.5
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.1e-15 84.7 104 47.1
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 4.6e-14 82.0 95 49.5
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 6.0e-14 81.6 103 49.5
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 7.8e-14 81.3 106 46.2
Medtr5g080950 Medicago truncatula HOM05D001070 ORTHO05D002096 1.0e-13 80.9 42 92.9
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.0e-13 79.3 102 46.1
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.1e-13 78.6 133 39.1
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 8.7e-13 77.8 70 55.7
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.5e-12 77.0 101 45.5
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 1.9e-12 76.6 130 38.5
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 1.9e-12 76.6 130 38.5
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 3.3e-12 75.9 130 38.5
BolSC37t60800H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-12 74.7 91 48.4
BolSC47t61060H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-12 74.7 91 48.4
Oeu011447.1 Olea europaea HOM05D001070 ORTHO05D002096 9.6e-12 74.3 73 54.8
HanXRQChr12g0376641 Helianthus annuus HOM05D001070 ORTHO05D002096 1.2e-11 73.9 98 40.8
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 1.6e-11 73.6 70 55.7
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-11 73.2 189 34.4
Lsat_1_v5_gn_6_14481 Lactuca sativa HOM05D001070 ORTHO05D002096 4.7e-11 72.0 84 46.4
Oeu011446.1 Olea europaea HOM05D001070 ORTHO05D002096 4.7e-11 72.0 73 53.4
BolC2t10605H Brassica oleracea HOM05D001070 ORTHO05D002096 6.2e-11 71.6 96 46.9
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.4e-10 70.5 149 35.6
Hund11512 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.8e-10 70.1 100 45.0
Solyc01g017480.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.4e-10 69.7 96 42.7
BraSC48t46326Z Brassica rapa HOM05D001070 ORTHO05D002096 1.5e-09 67.0 61 57.4
BraSC59t46532Z Brassica rapa HOM05D001070 ORTHO05D002096 2.0e-09 66.6 130 39.2
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 2.0e-09 66.6 130 35.4
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 2.0e-09 66.6 94 41.5
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 3.4e-09 65.9 46 67.4
HanXRQChr14g0428451 Helianthus annuus HOM05D001070 ORTHO05D002096 3.4e-09 65.9 58 53.4
HanXRQChr14g0428511 Helianthus annuus HOM05D001070 ORTHO05D002096 3.4e-09 65.9 58 53.4
Nitab4.5_0002691g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.4e-09 65.9 66 51.5
BolC9t56919H Brassica oleracea HOM05D001070 ORTHO05D002096 5.8e-09 65.1 122 35.2
MELO3C027943.2 Cucumis melo HOM05D001070 ORTHO05D002096 7.6e-09 64.7 46 67.4
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.3e-08 63.9 73 45.2
BolSC29t60513H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-08 63.5 41 73.2
BraSC179t45778Z Brassica rapa HOM05D001070 ORTHO05D002096 1.7e-08 63.5 41 73.2
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 1.7e-08 63.5 128 33.6
Hund29395 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.7e-08 63.5 76 46.1
BraSC58t46457Z Brassica rapa HOM05D001070 ORTHO05D002096 2.2e-08 63.2 61 55.7
BolSC29t60542H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-08 62.0 61 57.4
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 6.4e-08 61.6 46 60.9
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 6.4e-08 61.6 48 62.5
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 8.4e-08 61.2 128 33.6
MSTRG.27595 Avicennia marina HOM05D001070 ORTHO05D002096 1.4e-07 60.5 41 70.7
MELO3C030628.2 Cucumis melo HOM05D001070 ORTHO05D002096 2.4e-07 59.7 49 57.1
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.4e-07 59.7 77 45.5
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 5.4e-07 58.5 41 63.4
Eucgr.E00958 Eucalyptus grandis HOM05D000011 ORTHO05D000018 7.1e-07 58.2 54 59.3
HanXRQChr06g0182961 Helianthus annuus HOM05D001070 ORTHO05D002096 9.3e-07 57.8 46 63.0
Medtr2126s0020 Medicago truncatula HOM05D001070 ORTHO05D002096 1.2e-06 57.4 41 65.9
Nitab4.5_0000705g0080 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-06 57.4 67 44.8
MD05G1133100 Malus domestica HOM05D001070 ORTHO05D002096 3.5e-06 55.8 41 65.9
Lsat_1_v5_gn_6_14501 Lactuca sativa HOM05D001070 ORTHO05D002096 6.0e-06 55.1 43 58.1
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 7.8e-06 54.7 46 60.9
TPR.G34535 Trifolium pratense HOM05D001070 ORTHO05D002096 7.8e-06 54.7 41 63.4


User provided reference genes

Program Settings