Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 0.0e+00 1090.5 524 100.0
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 1.5e-252 875.9 472 88.8
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 4.1e-250 867.8 474 87.3
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.7e-240 835.9 518 76.3
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 2.5e-239 832.0 518 76.1
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.9e-231 805.8 477 79.2
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.8e-229 799.3 475 79.4
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.3e-227 793.1 475 78.7
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 8.9e-221 770.4 491 77.0
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 8.9e-221 770.4 491 77.0
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 8.9e-221 770.4 477 75.5
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.3e-214 750.0 467 75.8
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-203 711.8 520 64.4
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.2e-202 708.8 520 64.2
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 6.0e-201 704.5 515 64.5
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 1.9e-199 699.5 537 61.6
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 5.3e-197 691.4 488 66.8
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.2e-196 690.3 516 64.1
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 4.5e-196 688.3 514 62.1
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 3.2e-194 682.2 525 62.7
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 5.5e-194 681.4 524 62.2
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.7e-193 679.1 531 60.3
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.0e-192 677.2 521 60.8
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 2.3e-192 676.0 517 62.9
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 5.1e-192 674.9 474 66.9
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 6.7e-192 674.5 512 63.5
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 4.3e-191 671.8 493 64.1
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 1.3e-190 670.2 517 62.7
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 1.3e-190 670.2 469 65.2
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 6.9e-189 664.5 564 57.4
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.5e-188 663.3 472 66.1
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 5.0e-187 658.3 469 64.8
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 8.5e-187 657.5 514 61.5
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 2.5e-186 656.0 472 64.4
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 3.6e-185 652.1 531 60.5
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 1.3e-184 650.2 469 66.3
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 3.0e-184 649.0 464 64.0
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 3.9e-184 648.7 517 60.2
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 1.5e-183 646.7 490 61.8
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.6e-182 643.3 515 61.0
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 3.7e-182 642.1 492 64.4
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 1.8e-181 639.8 507 59.2
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 2.4e-181 639.4 492 63.8
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 5.3e-181 638.3 517 61.7
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 2.0e-180 636.3 525 61.5
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.6e-180 636.0 472 63.8
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 3.4e-180 635.6 496 60.1
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 6.5e-179 631.3 515 58.4
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 9.4e-178 627.5 480 61.5
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.6e-177 626.7 472 63.8
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.1e-177 626.3 524 58.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.7e-177 625.9 472 63.1
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 3.6e-177 625.5 509 60.7
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 3.6e-177 625.5 469 63.1
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 4.6e-177 625.2 478 60.9
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 4.6e-177 625.2 600 54.7
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 7.9e-177 624.4 570 57.2
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 3.9e-176 622.1 508 59.4
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 6.7e-176 621.3 479 63.5
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.1e-175 620.5 488 61.7
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 5.7e-175 618.2 465 63.0
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.2e-174 616.3 566 56.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 6.3e-174 614.8 490 61.2
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 8.2e-174 614.4 523 57.7
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 5.9e-172 608.2 468 62.8
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 5.9e-172 608.2 513 56.9
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 3.8e-171 605.5 526 57.2
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 4.2e-170 602.1 522 57.3
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.6e-169 600.1 427 66.7
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 3.9e-168 595.5 465 62.4
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 2.8e-166 589.3 522 56.1
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.3e-166 588.2 637 48.7
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 7.0e-165 584.7 469 58.6
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 5.9e-164 581.6 469 60.1
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.5e-162 577.0 493 57.6
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 1.9e-162 576.6 493 57.6
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 3.2e-162 575.9 522 55.6
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.2e-161 573.9 493 57.2
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.6e-161 573.5 493 57.6
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.6e-161 573.5 493 57.6
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.7e-161 572.8 526 55.5
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 1.5e-159 567.0 513 55.2
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.7e-158 563.5 523 51.2
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 6.3e-158 561.6 477 58.5
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.1e-157 560.8 537 49.9
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 2.5e-154 549.7 536 52.6
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 1.2e-153 547.4 515 54.8
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 1.0e-152 544.3 475 56.2
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 2.2e-150 536.6 516 51.0
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.6e-148 530.4 502 52.6
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.9e-146 523.5 514 49.2
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 4.7e-145 518.8 378 63.5
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 9.5e-138 494.6 493 52.5
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 4.4e-119 432.6 359 60.7
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 6.4e-118 428.7 330 62.7
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.6e-108 397.5 356 54.8
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 2.1e-108 397.1 303 62.0
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 3.6e-105 386.3 537 38.7
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 9.0e-104 381.7 294 59.9
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 3.0e-99 366.7 519 39.1
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 4.8e-97 359.4 528 39.8
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 5.1e-91 339.3 524 35.7
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 3.7e-89 333.2 277 59.2
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 9.9e-87 325.1 277 58.1
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 6.7e-83 312.4 298 49.7
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.1e-82 311.6 266 58.3
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 7.4e-82 308.9 220 62.3
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 3.3e-74 283.5 314 49.0
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 3.7e-73 280.0 244 57.0
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 8.8e-59 232.3 372 36.3
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 1.3e-57 228.4 202 54.0
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 5.9e-39 166.4 202 45.0
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.4e-34 150.6 85 80.0
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 4.8e-33 146.7 348 31.3
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 1.5e-26 125.2 92 59.8
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 2.6e-26 124.4 76 71.1
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.1e-20 104.8 75 68.0
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.0e-19 100.9 112 42.9
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.7e-17 95.1 113 43.4
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.9e-16 91.7 59 71.2
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 4.1e-16 90.5 100 44.0
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.0e-15 88.2 59 69.5
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.0e-15 86.7 53 73.6
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.0e-15 86.7 53 73.6
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.0e-14 85.9 59 69.5
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 4.3e-13 80.5 40 87.5
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 3.1e-11 74.3 70 52.9
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 6.8e-11 73.2 141 27.7
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 2.1e-07 61.6 102 42.2
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 3.5e-07 60.8 245 23.7
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.9e-06 57.4 59 50.8


User provided reference genes

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