Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 6.6e-188 660.6 344 100.0
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 4.3e-171 604.7 351 89.7
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.6e-165 584.7 355 87.0
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.6e-165 584.7 355 87.0
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 3.6e-154 548.5 299 94.0
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.5e-152 543.1 350 81.7
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 4.2e-150 535.0 353 80.5
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.0e-148 530.4 355 79.4
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 4.4e-144 515.0 364 76.6
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.9e-143 512.3 364 76.6
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 8.4e-143 510.8 354 77.7
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.5e-139 499.2 354 75.7
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.2e-136 490.3 348 75.0
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.9e-134 483.0 334 74.9
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 8.7e-132 474.2 313 78.3
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 3.3e-131 472.2 337 72.7
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 9.6e-131 470.7 334 72.8
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 9.6e-131 470.7 321 76.3
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 9.6e-131 470.7 332 74.1
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 1.3e-130 470.3 330 74.5
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.3e-130 470.3 332 72.6
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.6e-130 469.9 333 74.5
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.6e-130 469.9 310 77.4
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 6.2e-130 468.0 336 72.3
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.8e-129 466.5 311 76.8
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.1e-129 465.7 321 75.7
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 4.0e-129 465.3 311 77.5
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 4.0e-129 465.3 332 72.9
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 6.9e-129 464.5 336 73.5
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.2e-128 463.8 311 77.8
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.5e-128 463.4 336 72.0
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.5e-128 463.4 329 73.9
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.6e-128 462.6 316 77.2
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 4.5e-128 461.8 311 77.2
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.5e-128 461.8 316 75.6
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 7.6e-128 461.1 333 72.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.0e-127 460.7 311 77.2
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.3e-127 460.3 316 75.3
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.3e-127 460.3 333 72.7
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 2.9e-127 459.1 307 76.9
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 3.8e-127 458.8 327 73.4
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 4.9e-127 458.4 297 80.1
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 4.9e-127 458.4 343 71.7
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 8.4e-127 457.6 310 75.5
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.4e-126 456.8 332 73.8
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.9e-126 456.4 308 76.3
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 3.2e-126 455.7 333 71.5
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 5.5e-126 454.9 321 74.8
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 7.1e-126 454.5 316 75.3
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.6e-125 453.4 301 76.1
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.6e-125 453.4 303 75.6
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.6e-125 453.4 304 76.6
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.5e-125 452.2 334 71.6
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 6.0e-125 451.4 330 71.2
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 6.0e-125 451.4 327 70.3
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 6.0e-125 451.4 314 74.2
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 6.0e-125 451.4 312 72.8
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 7.9e-125 451.1 304 76.6
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.3e-124 450.3 304 76.0
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 1.8e-124 449.9 295 76.9
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.3e-124 449.5 342 70.5
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 2.3e-124 449.5 312 72.8
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 3.0e-124 449.1 312 72.4
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 6.7e-124 448.0 312 73.4
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 8.7e-124 447.6 337 69.1
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.7e-124 447.6 337 69.1
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.7e-124 447.6 337 69.1
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.1e-123 447.2 314 72.3
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.9e-123 446.4 313 72.2
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.9e-123 446.4 314 72.9
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.9e-123 446.4 337 69.4
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 5.7e-123 444.9 312 72.4
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 7.4e-123 444.5 313 72.2
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.6e-123 444.1 306 76.1
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.6e-122 443.4 333 71.8
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.6e-122 443.4 306 75.8
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.8e-122 442.6 313 71.9
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 2.8e-122 442.6 311 73.6
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 3.7e-122 442.2 316 72.8
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 6.2e-122 441.4 313 71.9
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 6.2e-122 441.4 303 74.9
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 6.2e-122 441.4 317 72.9
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 8.2e-122 441.0 312 72.8
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.1e-121 440.7 313 72.5
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.1e-121 440.7 307 72.0
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.4e-121 439.5 260 85.0
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 4.1e-121 438.7 265 82.6
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 4.1e-121 438.7 265 82.6
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.1e-121 438.7 317 72.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 9.0e-121 437.6 273 80.6
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 9.0e-121 437.6 314 71.7
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.2e-120 437.2 331 71.3
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.5e-120 436.8 279 78.1
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.0e-120 436.4 301 73.8
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.0e-120 436.4 321 72.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 2.0e-120 436.4 302 76.5
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 4.5e-120 435.3 313 71.6
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 4.5e-120 435.3 312 71.2
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 4.5e-120 435.3 288 78.8
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 4.5e-120 435.3 308 74.0
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.0e-119 434.1 314 71.3
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.0e-119 434.1 326 69.6
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.3e-119 433.7 331 68.9
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.9e-119 432.6 271 79.7
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.9e-119 432.6 271 79.7
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 5.0e-119 431.8 312 70.8
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 6.5e-119 431.4 316 71.8
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 6.5e-119 431.4 314 71.0
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 8.4e-119 431.0 327 67.9
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.1e-118 430.6 313 70.6
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.9e-118 429.9 269 80.3
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.2e-118 429.1 296 73.6
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 2.7e-117 426.0 340 67.1
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 2.3e-116 422.9 343 66.8
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 6.7e-116 421.4 306 70.3
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.5e-115 420.2 433 57.0
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 9.7e-115 417.5 327 70.0
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 9.7e-115 417.5 339 65.5
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.3e-114 417.2 273 78.4
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 8.2e-114 414.5 302 72.5
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 2.4e-113 412.9 325 66.5
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 3.1e-113 412.5 246 83.7
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-112 410.6 300 71.7
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.0e-112 409.8 385 60.8
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 7.2e-110 401.4 339 65.2
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.1e-109 399.8 324 65.1
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.3e-107 392.5 300 67.7
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 4.3e-107 392.1 272 72.4
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.1e-105 387.5 225 84.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.8e-105 386.7 310 67.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.4e-105 386.3 293 69.6
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.3e-105 385.2 279 71.7
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.2e-104 384.0 246 77.2
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.5e-104 383.6 246 76.8
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 2.6e-104 382.9 359 62.1
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 9.4e-102 374.4 272 70.2
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.0e-95 354.4 251 68.5
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 8.8e-92 341.3 309 62.8
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.6e-88 330.5 255 64.3
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 2.7e-88 329.7 247 69.6
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.7e-87 327.0 248 67.3
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 7.8e-64 248.4 199 63.8
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 6.8e-60 235.3 155 76.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 3.4e-59 233.0 155 75.5
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 2.7e-56 223.4 183 61.2
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.7e-56 223.4 164 65.9
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 5.1e-47 192.6 108 89.8
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.8e-36 157.5 99 80.8
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.1e-36 156.8 99 79.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.2e-33 146.4 111 68.5
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 2.1e-32 144.1 131 58.0
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 7.9e-24 115.5 102 61.8
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 6.9e-20 102.4 61 83.6
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 4.5e-19 99.8 64 78.1


User provided reference genes

Program Settings