Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 4.3e-212 741.1 388 100.0
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.3e-165 585.9 366 84.4
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 4.4e-164 581.6 358 86.6
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.7e-163 579.7 361 86.1
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.1e-146 523.9 362 76.5
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.2e-145 520.4 369 76.4
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 3.5e-145 518.8 366 75.7
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 5.0e-144 515.0 366 76.5
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.9e-143 513.1 372 72.8
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.6e-142 510.0 368 73.6
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 8.9e-141 504.2 373 72.9
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 3.8e-136 488.8 368 70.4
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 2.6e-124 449.5 364 65.7
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 4.1e-122 442.2 361 65.1
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 4.9e-115 418.7 366 61.7
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.1e-114 417.5 365 61.4
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.4e-114 416.4 362 61.0
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 4.1e-114 415.6 378 59.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 4.1e-114 415.6 362 59.9
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 7.1e-114 414.8 361 61.2
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 9.2e-114 414.5 365 61.4
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.7e-113 412.9 365 61.4
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 3.5e-113 412.5 364 59.9
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.6e-113 412.1 358 61.2
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.0e-112 411.0 358 61.2
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.3e-112 410.6 358 60.9
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.3e-112 410.6 358 60.9
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 2.3e-112 409.8 338 63.0
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.0e-112 409.5 358 60.9
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 3.0e-112 409.5 361 60.4
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 3.9e-112 409.1 363 60.9
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 5.1e-112 408.7 391 58.6
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 5.1e-112 408.7 363 59.5
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.5e-111 407.1 364 60.4
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.1e-110 403.3 358 59.5
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.6e-110 402.5 358 60.1
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 6.2e-110 401.7 361 59.8
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 3.1e-109 399.4 380 56.6
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 3.1e-109 399.4 366 60.4
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 8.9e-109 397.9 362 58.6
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 1.2e-108 397.5 365 60.0
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.6e-108 396.4 366 57.7
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 7.6e-108 394.8 407 55.0
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 2.2e-107 393.3 366 58.7
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 2.9e-107 392.9 363 57.6
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 4.9e-107 392.1 365 58.4
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 6.4e-107 391.7 352 60.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 1.9e-106 390.2 365 57.5
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 4.2e-106 389.0 367 56.4
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.6e-105 387.1 364 59.3
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 2.7e-105 386.3 361 58.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.3e-104 384.0 367 56.4
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.3e-104 384.0 361 58.2
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 3.0e-104 382.9 370 56.5
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 1.5e-103 380.6 361 57.9
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 7.3e-103 378.3 414 53.9
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.3e-102 377.5 363 56.5
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 2.8e-102 376.3 356 57.6
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 3.6e-102 375.9 348 59.2
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.1e-101 374.4 354 56.5
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 5.3e-101 372.1 355 54.6
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 6.9e-101 371.7 343 57.4
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.2e-100 370.9 415 51.1
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.0e-100 370.2 365 54.5
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 2.0e-100 370.2 339 58.4
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 4.9e-99 365.5 366 51.6
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.9e-98 363.6 331 60.1
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 5.4e-98 362.1 378 53.4
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 9.3e-98 361.3 368 54.1
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.7e-97 359.8 338 55.6
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 3.5e-97 359.4 355 53.2
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.7e-96 357.1 344 55.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 3.9e-96 355.9 356 52.5
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.1e-95 354.4 355 52.4
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.5e-95 354.0 358 52.5
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 5.6e-95 352.1 322 61.2
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 7.3e-95 351.7 358 52.5
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 9.6e-95 351.3 355 51.0
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.8e-94 349.7 360 52.5
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 2.8e-94 349.7 355 51.8
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.5e-92 344.0 369 51.2
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 1.5e-92 344.0 357 52.7
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 3.4e-92 342.8 350 51.4
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 5.8e-92 342.0 358 51.7
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 7.6e-92 341.7 304 61.5
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.2e-91 340.1 361 50.7
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 5.4e-90 335.5 297 58.9
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 9.3e-90 334.7 355 50.1
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 9.3e-90 334.7 245 74.3
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 1.6e-89 334.0 355 50.1
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 7.9e-89 331.6 304 60.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.0e-88 331.3 358 48.3
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-88 331.3 349 51.3
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.3e-88 330.1 352 50.0
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 3.9e-88 329.3 365 48.5
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.1e-88 328.9 358 49.7
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 1.6e-86 323.9 306 57.8
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 4.8e-86 322.4 353 51.6
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 3.1e-85 319.7 299 56.2
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.2e-84 317.8 360 47.5
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.6e-84 316.6 364 47.3
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 2.6e-84 316.6 353 49.6
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 5.8e-84 315.5 311 53.1
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.1e-82 311.2 359 48.2
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.2e-81 307.8 348 48.6
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 3.5e-81 306.2 344 48.8
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.0e-80 304.7 281 59.4
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 5.3e-77 292.4 360 47.5
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.2e-76 291.2 281 56.2
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.5e-76 290.8 344 45.9
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 7.1e-74 282.0 344 47.1
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 3.5e-73 279.6 379 44.3
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 2.4e-69 266.9 357 43.4
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.0e-67 261.5 382 41.6
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 4.2e-66 256.1 375 41.1
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.2e-65 254.6 271 52.4
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 7.9e-65 251.9 333 43.2
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.1e-63 248.1 339 42.5
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 3.1e-61 240.0 241 55.2
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.2e-60 238.0 237 55.7
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 4.5e-60 236.1 227 54.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 2.1e-57 227.3 342 41.8
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.0e-55 220.7 329 39.8
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.3e-54 218.0 233 52.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 8.8e-48 195.3 275 45.1
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-43 181.8 299 39.5
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 1.7e-43 181.0 308 38.0
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 6.1e-41 172.6 238 45.0
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 5.2e-40 169.5 356 34.0
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.5e-34 151.4 423 29.6
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.0e-32 145.2 125 60.0
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 5.2e-32 142.9 181 46.4
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 2.6e-31 140.6 128 51.6
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.5e-26 124.8 373 27.9
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 3.3e-26 123.6 175 48.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.3e-22 111.7 243 32.1
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 6.4e-14 82.8 201 29.9
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 6.4e-14 82.8 334 26.0
PGR142G1573 Punica granatum HOM05D005473 ORTHO05D006543 1.4e-13 81.6 258 27.5
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 3.9e-11 73.6 151 35.1
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 3.3e-10 70.5 73 54.8
Medtr4g117060 Medicago truncatula HOM05D005473 ORTHO05D002335 8.9e-08 62.4 52 69.2
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 3.4e-07 60.5 56 57.1
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 7.5e-07 59.3 56 55.4
Psat7g142360 Pisum sativum HOM05D003490 ORTHO05D006323 6.4e-06 56.2 117 35.0


User provided reference genes

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