Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 6.9e-44 180.3 91 100.0
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.9e-23 111.3 70 81.4
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 5.1e-23 110.9 94 62.8
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 5.1e-23 110.9 73 78.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-21 106.3 96 60.4
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-21 106.3 96 60.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-21 106.3 96 60.4
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 4.8e-21 104.4 70 77.1
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 6.3e-21 104.0 70 75.7
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 8.2e-21 103.6 96 59.4
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 6.9e-20 100.5 82 65.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 6.9e-20 100.5 70 72.9
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 9.0e-20 100.1 70 72.9
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 9.0e-20 100.1 70 74.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.6e-19 98.6 70 72.9
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.9e-19 97.4 70 71.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.3e-18 96.3 70 71.4
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.3e-18 96.3 70 72.9
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.7e-18 95.9 85 62.4
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.7e-18 95.9 85 62.4
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.2e-18 95.5 85 62.4
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 2.2e-18 95.5 70 72.9
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.9e-18 95.1 82 63.4
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.9e-18 95.1 86 60.5
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.8e-18 94.7 70 71.4
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.0e-18 94.4 70 71.4
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.0e-18 94.4 70 71.4
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 6.5e-18 94.0 82 62.2
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 6.5e-18 94.0 70 72.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 6.5e-18 94.0 85 61.2
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 6.5e-18 94.0 70 70.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 8.5e-18 93.6 70 70.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.1e-17 93.2 71 70.4
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-17 93.2 85 61.2
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.4e-17 92.8 70 70.0
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.4e-17 92.8 70 70.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.4e-17 92.8 82 62.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.9e-17 92.4 70 65.7
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.9e-17 92.4 71 70.4
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.5e-17 92.0 71 70.4
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 2.5e-17 92.0 70 70.0
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.5e-17 92.0 82 62.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.5e-17 92.0 82 63.4
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 3.2e-17 91.7 70 68.6
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.2e-17 91.7 71 69.0
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 4.2e-17 91.3 70 70.0
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.2e-17 91.3 82 62.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.5e-17 90.9 82 61.0
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 7.2e-17 90.5 70 70.0
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 7.2e-17 90.5 71 69.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 7.2e-17 90.5 82 61.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 7.2e-17 90.5 82 61.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 9.3e-17 90.1 83 62.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.2e-16 89.7 70 68.6
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-16 89.7 72 68.1
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.2e-16 89.7 71 64.8
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.2e-16 89.7 82 61.0
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.6e-16 89.4 71 67.6
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-16 89.4 70 65.7
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-16 89.4 70 65.7
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-16 89.4 82 59.8
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.1e-16 89.0 70 68.6
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.1e-16 89.0 70 67.1
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.1e-16 89.0 70 68.6
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.1e-16 89.0 84 57.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.1e-16 89.0 86 59.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.7e-16 88.6 70 68.6
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.7e-16 88.6 71 67.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.7e-16 88.6 70 67.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.7e-16 88.6 70 67.1
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.7e-16 88.6 70 64.3
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.6e-16 88.2 70 65.7
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 3.6e-16 88.2 82 59.8
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 4.6e-16 87.8 70 64.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-16 87.8 70 64.3
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 4.6e-16 87.8 76 61.8
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 4.6e-16 87.8 82 61.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 4.6e-16 87.8 70 68.6
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 6.1e-16 87.4 71 67.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 7.9e-16 87.0 83 60.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 7.9e-16 87.0 64 70.3
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 7.9e-16 87.0 74 63.5
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.0e-15 86.7 71 66.2
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.0e-15 86.7 70 65.7
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-15 86.3 72 65.3
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.8e-15 85.9 83 57.8
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.8e-15 85.9 86 60.5
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 5.1e-15 84.3 71 63.4
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 5.1e-15 84.3 71 63.4
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 6.7e-15 84.0 70 65.7
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 6.7e-15 84.0 96 50.0
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.5e-14 82.8 72 62.5
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.9e-14 82.4 84 57.1
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.5e-14 82.0 70 64.3
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.3e-14 81.6 70 61.4
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 3.3e-14 81.6 75 61.3
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 3.3e-14 81.6 75 61.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 5.7e-14 80.9 78 59.0
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.7e-14 80.9 94 50.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 7.4e-14 80.5 73 60.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 9.7e-14 80.1 84 56.0
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-13 79.3 75 58.7
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.2e-13 79.0 75 57.3
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.8e-13 78.6 71 62.0
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.8e-13 78.6 80 58.8
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.8e-13 78.6 95 50.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.7e-13 78.2 58 69.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 4.8e-13 77.8 79 57.0
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.8e-13 77.8 82 56.1
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.8e-13 77.8 82 56.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-12 76.3 72 59.7
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.4e-12 76.3 106 47.2
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.8e-12 75.9 77 51.9
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-12 75.5 76 56.6
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.1e-12 74.7 77 55.8
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 9.1e-12 73.6 79 54.4
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.2e-11 73.2 101 46.5
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.0e-11 72.4 85 52.9
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.0e-11 72.4 82 51.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.4e-11 71.6 70 58.6
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 4.5e-11 71.2 82 52.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-10 70.1 82 52.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-10 70.1 82 52.4
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.0e-10 70.1 82 52.4
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.9e-10 68.6 109 42.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.9e-10 68.6 86 48.8
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 2.9e-10 68.6 83 50.6
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 6.5e-10 67.4 86 48.8
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 6.5e-10 67.4 86 48.8
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.1e-09 66.6 88 45.5
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-09 66.6 77 49.4
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.5e-09 65.5 82 50.0
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.5e-09 64.3 70 55.7
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-08 62.0 69 53.6
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 6.1e-08 60.8 70 47.1
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 6.7e-07 57.4 58 53.4
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.1e-06 56.6 43 67.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.6e-06 55.5 43 65.1
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.7e-06 54.3 57 56.1


User provided reference genes

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