Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g107145 Medicago truncatula HOM05D003511 ORTHO05D004403 3.4e-76 288.1 133 100.0
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 3.8e-19 98.6 54 83.3
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 4.7e-17 91.7 56 75.0
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 4.7e-17 91.7 56 75.0
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 2.3e-16 89.4 75 58.7
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 3.0e-16 89.0 54 74.1
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 6.8e-16 87.8 58 70.7
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 8.9e-16 87.4 61 67.2
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 8.9e-16 87.4 57 71.9
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 1.2e-15 87.0 54 72.2
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 1.2e-15 87.0 55 70.9
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 4.4e-15 85.1 56 67.9
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 4.4e-15 85.1 55 72.7
RcHm_v2.0_Chr6g0254581 Rosa chinensis HOM05D003511 ORTHO05D004403 9.8e-15 84.0 49 71.4
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 1.3e-14 83.6 56 66.1
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 1.3e-14 83.6 55 65.5
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.7e-14 83.2 52 67.3
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.7e-14 83.2 52 67.3
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 1.7e-14 83.2 49 69.4
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.8e-14 82.4 58 63.8
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 3.7e-14 82.0 52 67.3
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 4.9e-14 81.6 59 62.7
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 4.9e-14 81.6 47 72.3
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 4.9e-14 81.6 47 76.6
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 6.3e-14 81.3 56 66.1
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 6.3e-14 81.3 56 66.1
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 6.3e-14 81.3 56 66.1
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 6.3e-14 81.3 59 66.1
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 6.3e-14 81.3 56 66.1
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 8.3e-14 80.9 57 61.4
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 8.3e-14 80.9 48 70.8
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 8.3e-14 80.9 56 64.3
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 1.4e-13 80.1 55 70.9
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 1.4e-13 80.1 54 64.8
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 1.8e-13 79.7 49 69.4
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 1.8e-13 79.7 56 62.5
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 1.8e-13 79.7 47 72.3
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 1.8e-13 79.7 49 69.4
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 2.4e-13 79.3 49 71.4
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.4e-13 79.3 85 50.6
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.4e-13 79.3 56 62.5
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 4.1e-13 78.6 46 71.7
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.1e-13 78.6 49 67.3
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.1e-13 78.6 49 67.3
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 4.1e-13 78.6 56 64.3
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 4.1e-13 78.6 47 72.3
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 5.4e-13 78.2 48 68.8
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 5.4e-13 78.2 48 68.8
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 5.4e-13 78.2 49 67.3
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 5.4e-13 78.2 49 67.3
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 5.4e-13 78.2 49 67.3
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 7.0e-13 77.8 48 64.6
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 7.0e-13 77.8 54 68.5
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 7.0e-13 77.8 49 67.3
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 7.0e-13 77.8 49 67.3
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 7.0e-13 77.8 49 67.3
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 7.0e-13 77.8 51 64.7
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 9.2e-13 77.4 57 63.2
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 9.2e-13 77.4 49 67.3
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.2e-12 77.0 51 62.7
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 1.2e-12 77.0 55 58.2
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.2e-12 77.0 52 65.4
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 2.0e-12 76.3 43 69.8
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 2.7e-12 75.9 49 73.5
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 2.7e-12 75.9 47 70.2
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 2.7e-12 75.9 43 69.8
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 2.7e-12 75.9 47 68.1
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 3.5e-12 75.5 47 63.8
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 3.5e-12 75.5 59 59.3
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 3.5e-12 75.5 49 65.3
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 3.5e-12 75.5 56 64.3
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 5.9e-12 74.7 49 65.3
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 5.9e-12 74.7 44 65.9
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 5.9e-12 74.7 55 61.8
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 5.9e-12 74.7 52 61.5
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 7.8e-12 74.3 56 62.5
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 7.8e-12 74.3 49 65.3
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 7.8e-12 74.3 47 66.0
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 7.8e-12 74.3 47 66.0
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.0e-11 73.9 46 67.4
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 1.0e-11 73.9 64 54.7
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 1.3e-11 73.6 56 60.7
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 1.3e-11 73.6 55 61.8
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 1.3e-11 73.6 47 63.8
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 1.7e-11 73.2 51 66.7
CSS0009203 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.7e-11 73.2 49 61.2
CSS0016029 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.7e-11 73.2 49 61.2
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.7e-11 73.2 47 66.0
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 2.3e-11 72.8 49 63.3
CSS0034894 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 2.3e-11 72.8 57 61.4
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 2.9e-11 72.4 43 69.8
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 2.9e-11 72.4 53 58.5
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.9e-11 72.4 57 54.4
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 3.9e-11 72.0 47 61.7
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 3.9e-11 72.0 47 61.7
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 3.9e-11 72.0 52 55.8
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 6.6e-11 71.2 55 58.2
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 8.6e-11 70.9 56 55.4
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 8.6e-11 70.9 50 56.0
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 8.6e-11 70.9 47 66.0
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 8.6e-11 70.9 44 65.9
SEGI_03881 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 8.6e-11 70.9 42 69.0
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.1e-10 70.5 57 54.4
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 1.1e-10 70.5 43 69.8
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.5e-10 70.1 58 50.0
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 1.5e-10 70.1 47 63.8
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 1.5e-10 70.1 56 53.6
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 1.5e-10 70.1 54 57.4
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.9e-10 69.7 43 72.1
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 2.5e-10 69.3 67 47.8
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 2.5e-10 69.3 43 67.4
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 2.5e-10 69.3 56 57.1
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 2.5e-10 69.3 50 58.0
SEGI_08198 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 2.5e-10 69.3 42 66.7
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 3.3e-10 68.9 69 47.8
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 4.3e-10 68.6 44 65.9
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 4.3e-10 68.6 44 65.9
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 4.3e-10 68.6 44 65.9
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 4.3e-10 68.6 44 65.9
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 4.3e-10 68.6 44 65.9
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.3e-10 68.6 65 53.8
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 4.3e-10 68.6 44 68.2
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 5.6e-10 68.2 44 65.9
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 7.3e-10 67.8 60 55.0
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 9.5e-10 67.4 44 65.9
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 9.5e-10 67.4 47 59.6
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 9.5e-10 67.4 47 59.6
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.2e-09 67.0 43 67.4
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.6e-09 66.6 48 60.4
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 2.1e-09 66.2 60 48.3
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 2.8e-09 65.9 44 63.6
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 4.7e-09 65.1 55 54.5
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 4.7e-09 65.1 44 63.6
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 4.7e-09 65.1 43 65.1
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 4.7e-09 65.1 56 51.8
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 1.0e-08 63.9 48 54.2
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 1.0e-08 63.9 44 61.4
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.0e-08 63.9 89 38.2
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.0e-08 63.9 42 59.5
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 1.4e-08 63.5 55 50.9
Lj5A215G56 Lonicera japonica HOM05D003511 ORTHO05D004403 1.4e-08 63.5 48 58.3
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.8e-08 63.2 56 50.0
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 2.3e-08 62.8 44 56.8
AagrBONN_evm.TU.Sc2ySwM_344.4245 Anthoceros agrestis HOM05D003511 ORTHO05D004403 3.1e-08 62.4 41 61.0
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 4.0e-08 62.0 56 42.9
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 6.8e-08 61.2 46 52.2
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 6.8e-08 61.2 42 59.5
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 8.9e-08 60.8 42 57.1
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 1.5e-07 60.1 50 52.0
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 2.6e-07 59.3 48 52.1
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 4.4e-07 58.5 34 70.6
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 4.4e-07 58.5 42 59.5


User provided reference genes

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