Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 0.0e+00 1238.0 716 100.0
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 4.1e-277 958.0 725 82.3
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.8e-272 942.6 722 80.6
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 5.3e-232 808.1 772 70.5
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 3.4e-231 805.4 735 70.9
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.1e-208 728.8 814 59.2
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.0e-203 714.1 803 59.7
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 5.3e-200 701.8 803 58.9
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 9.8e-178 627.9 772 55.1
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.4e-176 624.0 727 59.1
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 4.7e-172 609.0 727 58.5
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 6.2e-164 582.0 763 53.7
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.7e-161 572.8 746 55.1
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 5.4e-160 568.9 812 52.3
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 6.0e-159 565.5 834 53.6
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 5.6e-157 558.9 774 53.1
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 2.6e-154 550.1 889 46.2
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 6.4e-153 545.4 896 43.6
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.7e-151 540.0 824 49.8
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.0e-150 538.1 761 53.0
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.0e-150 536.6 751 53.1
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 2.5e-149 533.5 808 48.3
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 4.7e-148 529.3 815 50.2
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.8e-145 519.6 795 49.7
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 5.4e-144 515.8 788 49.5
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 7.1e-144 515.4 844 48.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 9.3e-144 515.0 849 46.8
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.6e-143 514.2 756 51.5
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 6.0e-143 512.3 788 49.4
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 8.7e-142 508.4 785 49.6
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.8e-138 495.7 774 47.5
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.7e-137 494.2 817 50.3
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 4.2e-136 489.6 812 48.8
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.2e-135 488.0 814 49.6
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.6e-134 482.3 803 50.8
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.5e-133 481.1 830 41.9
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 1.5e-133 481.1 728 51.2
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 3.8e-129 466.5 1004 41.0
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 3.2e-128 463.4 716 51.0
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 3.9e-126 456.4 871 43.7
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.1e-123 448.4 799 45.9
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.4e-123 447.2 789 46.1
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.0e-122 444.1 738 47.0
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 1.7e-121 441.0 776 43.4
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.4e-120 438.0 798 45.2
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.6e-119 434.5 859 43.1
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 3.5e-119 433.3 867 42.2
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.9e-117 427.6 824 42.5
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 4.3e-117 426.4 710 43.1
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 7.4e-117 425.6 780 46.7
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 6.3e-116 422.5 657 53.3
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 8.2e-116 422.2 493 53.5
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 5.3e-115 419.5 930 39.8
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 2.6e-114 417.2 818 42.4
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 4.5e-114 416.4 697 45.9
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 5.9e-114 416.0 736 46.1
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 3.8e-113 413.3 702 45.2
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.3e-110 404.8 430 58.4
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.8e-110 404.4 818 44.1
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 2.3e-110 404.1 607 46.0
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.3e-110 404.1 815 40.2
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 8.7e-110 402.1 818 44.3
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.5e-109 401.4 846 40.8
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.6e-108 397.9 700 44.6
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 2.8e-108 397.1 715 45.3
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.1e-107 393.7 828 42.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 6.9e-107 392.5 700 42.1
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 2.1e-103 380.9 759 44.1
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 3.6e-103 380.2 739 44.2
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 6.1e-103 379.4 729 42.2
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 3.9e-102 376.7 805 40.4
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 6.7e-102 375.9 734 44.1
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.1e-101 375.2 704 44.9
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 9.7e-101 372.1 733 41.9
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 2.8e-100 370.5 703 45.1
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 8.2e-100 369.0 721 41.9
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 7.7e-98 362.5 784 41.5
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.7e-97 361.3 694 40.3
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.2e-97 360.9 753 39.2
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.1e-96 358.6 680 44.1
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 9.4e-96 355.5 676 45.1
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 1.0e-94 352.1 763 40.9
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.0e-94 350.5 724 42.0
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.8e-91 341.3 409 54.0
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.0e-89 335.5 786 42.5
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.0e-89 335.5 732 40.6
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.3e-89 335.1 541 44.2
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 2.2e-89 334.3 727 42.0
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 1.5e-88 331.6 734 40.6
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 2.5e-88 330.9 698 41.5
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 2.1e-87 327.8 730 41.0
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.7e-87 327.4 755 41.3
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 2.3e-78 297.7 456 46.3
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 5.2e-78 296.6 857 34.5
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 4.8e-76 290.0 437 44.6
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 5.6e-56 223.4 544 42.3
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.2e-53 215.7 342 42.4
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.2e-53 215.7 342 42.4
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.4e-45 187.6 521 43.0
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 8.3e-44 183.0 329 42.2
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 3.2e-43 181.0 887 27.4
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 9.9e-37 159.5 146 61.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 7.8e-34 149.8 730 29.0
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 3.3e-32 144.4 299 38.1
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 4.6e-26 124.0 132 54.5
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 9.6e-24 116.3 312 41.0
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 1.2e-21 109.4 233 38.2
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.7e-20 105.5 151 50.3
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.9e-20 104.0 174 47.1
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 6.4e-20 103.6 194 40.7
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 6.4e-20 103.6 353 35.1
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 4.6e-18 97.4 92 57.6
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.5e-16 92.4 136 50.0
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 5.3e-14 84.0 62 69.4
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 3.2e-11 74.7 103 46.6
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.3e-08 64.7 42 81.0
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.1e-07 62.0 47 66.0
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 4.8e-07 60.8 172 40.1
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 1.8e-06 58.9 362 31.5
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 4.0e-06 57.8 121 33.9
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 4.0e-06 57.8 90 45.6


User provided reference genes

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