Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 1.6e-58 229.2 114 100.0
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 2.0e-45 185.7 114 84.2
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 3.5e-45 184.9 112 81.2
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 2.8e-42 175.3 114 77.2
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.4e-33 146.4 114 68.4
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 1.5e-32 142.9 114 67.5
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.5e-32 142.9 115 67.0
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 3.0e-28 128.6 114 64.0
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 2.1e-26 122.5 108 62.0
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 3.0e-20 102.1 111 56.8
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 3.6e-18 95.1 109 55.0
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 1.3e-15 86.7 108 53.7
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 1.7e-15 86.3 114 49.1
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 6.4e-15 84.3 117 49.6
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.1e-14 83.6 116 46.6
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.1e-14 83.6 67 64.2
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.4e-14 82.4 68 61.8
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 2.4e-14 82.4 68 61.8
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 4.2e-14 81.6 67 62.7
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 4.2e-14 81.6 67 64.2
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 5.4e-14 81.3 109 48.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 5.4e-14 81.3 116 45.7
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 1.2e-13 80.1 71 63.4
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 1.6e-13 79.7 75 58.7
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.6e-13 79.7 115 45.2
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.7e-13 79.0 84 58.3
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 2.7e-13 79.0 112 44.6
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 3.5e-13 78.6 112 44.6
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 1.0e-12 77.0 113 43.4
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 1.8e-12 76.3 81 54.3
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.8e-12 76.3 68 57.4
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.3e-12 75.9 74 62.2
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.3e-12 75.9 117 46.2
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 2.3e-12 75.9 117 46.2
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 3.0e-12 75.5 68 57.4
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 3.9e-12 75.1 68 60.3
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 3.9e-12 75.1 61 65.6
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 3.9e-12 75.1 62 67.7
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 5.1e-12 74.7 68 57.4
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 8.7e-12 73.9 73 54.8
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 8.7e-12 73.9 64 67.2
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 1.1e-11 73.6 119 42.9
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.1e-11 73.6 114 43.0
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.9e-11 72.8 74 56.8
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 1.9e-11 72.8 62 62.9
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 3.3e-11 72.0 71 53.5
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 3.3e-11 72.0 65 66.2
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 4.3e-11 71.6 114 47.4
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 7.4e-11 70.9 92 47.8
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 7.4e-11 70.9 92 47.8
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.6e-10 69.7 108 44.4
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.6e-10 69.7 115 44.3
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 2.1e-10 69.3 66 57.6
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.1e-10 69.3 97 47.4
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 2.8e-10 68.9 68 55.9
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 3.6e-10 68.6 69 58.0
Lalb_Chr02g0144981 Lupinus albus HOM05D007107 ORTHO05D009198 4.8e-10 68.2 89 49.4
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 4.8e-10 68.2 67 56.7
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 8.1e-10 67.4 76 51.3
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.4e-09 66.6 72 56.9
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.4e-09 66.6 72 56.9
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 3.1e-09 65.5 77 55.8
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 5.3e-09 64.7 74 56.8
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 5.3e-09 64.7 70 50.0
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 6.9e-09 64.3 93 44.1
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.9e-09 64.3 72 55.6
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 9.0e-09 63.9 68 54.4
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 2.6e-08 62.4 62 59.7
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 2.6e-08 62.4 68 51.5
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 3.4e-08 62.0 73 56.2
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 5.8e-08 61.2 68 52.9
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 7.6e-08 60.8 57 57.9
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 1.7e-07 59.7 65 60.0
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 3.8e-07 58.5 66 47.0
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.4e-07 57.8 115 40.9
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 6.4e-07 57.8 57 56.1
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 8.4e-07 57.4 64 56.2
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 8.4e-07 57.4 64 56.2
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 8.4e-07 57.4 67 56.7
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 1.1e-06 57.0 73 46.6
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 1.9e-06 56.2 110 39.1
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 2.4e-06 55.8 64 56.2
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 4.2e-06 55.1 64 54.7
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 5.5e-06 54.7 63 57.1
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 9.3e-06 53.9 61 57.4
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 9.3e-06 53.9 66 54.5
FAN24G1269 Fragaria x ananassa HOM05D007107 ORTHO05D009198 9.3e-06 53.9 44 59.1
Lalb_Chr25g0278741 Lupinus albus HOM05D007107 ORTHO05D009198 9.3e-06 53.9 54 59.3


User provided reference genes

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