Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 8.9e-137 490.3 262 100.0
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 8.7e-100 367.5 272 78.7
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 4.7e-85 318.5 209 82.3
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 7.9e-85 317.8 304 65.1
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 1.5e-83 313.5 307 61.6
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 9.7e-83 310.8 296 65.5
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 6.3e-82 308.1 332 58.4
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 9.1e-81 304.3 321 60.4
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 3.6e-77 292.4 193 83.9
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 1.5e-75 287.0 314 57.0
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 2.2e-74 283.1 298 60.4
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 5.9e-72 275.0 331 54.4
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.8e-58 229.6 296 54.4
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 5.0e-55 218.8 299 53.5
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 8.6e-55 218.0 258 56.2
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 2.4e-41 173.3 329 43.2
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 2.3e-39 166.8 285 50.2
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.6e-37 160.6 340 41.2
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 8.0e-37 158.3 330 43.0
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 3.1e-36 156.4 289 48.8
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 1.5e-35 154.1 327 43.1
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 2.6e-35 153.3 333 40.8
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.3e-34 151.0 336 40.2
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 3.7e-34 149.4 325 39.7
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 8.3e-34 148.3 334 38.3
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 8.3e-34 148.3 325 39.4
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.4e-33 147.5 336 39.9
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 1.9e-33 147.1 336 39.9
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 4.1e-33 146.0 282 45.0
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 1.6e-32 144.1 325 39.4
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 7.8e-32 141.7 330 41.5
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.0e-31 141.4 339 38.9
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 1.0e-31 141.4 334 39.5
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 2.5e-30 136.7 336 35.7
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 4.3e-30 136.0 334 38.3
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 5.6e-30 135.6 329 37.4
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.2e-29 134.4 330 36.7
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.2e-29 134.4 330 36.7
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 1.1e-28 131.3 334 37.4
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 4.0e-28 129.4 332 34.9
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 1.2e-27 127.9 336 36.3
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 1.2e-27 127.9 337 36.2
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 2.6e-27 126.7 334 35.6
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.4e-27 126.3 312 36.9
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 1.3e-26 124.4 304 38.8
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 4.9e-26 122.5 203 44.3
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.4e-25 120.9 332 34.9
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.9e-25 120.6 240 42.1
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 9.2e-25 118.2 338 34.9
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 1.6e-24 117.5 335 36.4
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 2.7e-24 116.7 261 39.1
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 3.5e-24 116.3 280 38.6
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 4.6e-24 115.9 267 36.7
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 6.0e-24 115.5 265 39.2
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 7.8e-24 115.2 148 48.6
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 1.3e-23 114.4 214 43.5
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.3e-23 113.6 337 34.4
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 3.9e-23 112.8 245 40.4
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 3.9e-23 112.8 258 38.8
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 5.1e-23 112.5 268 38.8
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 6.6e-23 112.1 383 32.9
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 1.9e-22 110.5 277 36.8
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 1.9e-22 110.5 351 34.2
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 7.3e-22 108.6 332 34.9
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.1e-21 107.1 175 44.0
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 4.7e-21 105.9 224 39.7
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 1.4e-20 104.4 335 32.8
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.4e-20 104.4 243 37.0
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 5.2e-20 102.4 342 33.9
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 6.8e-20 102.1 217 45.2
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 2.0e-19 100.5 258 36.0
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 4.4e-19 99.4 294 37.1
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 4.4e-19 99.4 270 35.2
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 7.6e-19 98.6 317 35.3
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 2.9e-18 96.7 337 32.9
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 8.4e-18 95.1 293 34.5
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 1.4e-17 94.4 247 35.2
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.0e-15 88.2 312 33.0
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.7e-15 87.4 226 33.6
Psat4g227520 Pisum sativum HOM05D006273 ORTHO05D007607 5.1e-15 85.9 196 42.9
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 5.1e-15 85.9 208 36.1
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 8.7e-15 85.1 245 34.7
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 1.9e-14 84.0 290 34.1
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 8.1e-13 78.6 275 33.5
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 1.1e-12 78.2 285 32.6
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 9.0e-12 75.1 142 38.7
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 5.8e-11 72.4 174 34.5
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 9.9e-11 71.6 289 31.1
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 9.9e-11 71.6 289 31.1
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 1.3e-10 71.2 168 38.7
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 2.9e-10 70.1 236 35.2
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 8.4e-10 68.6 315 34.3
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 8.4e-10 68.6 282 32.6
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 1.1e-09 68.2 300 34.7
Medtr5g005040 Medicago truncatula HOM05D006273 ORTHO05D007607 1.1e-09 68.2 152 38.2
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 1.1e-09 68.2 320 30.9
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 4.2e-09 66.2 287 31.0
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 7.1e-09 65.5 269 31.6
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 1.0e-07 61.6 301 32.9
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 1.0e-07 61.6 280 30.4
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 3.0e-07 60.1 266 32.0
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 8.7e-07 58.5 286 32.5
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 1.1e-06 58.2 276 30.8
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 2.5e-06 57.0 313 31.9
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 3.3e-06 56.6 340 30.0
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 5.6e-06 55.8 164 36.0
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 7.3e-06 55.5 259 28.2


User provided reference genes

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