Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g105085 Medicago truncatula HOM05D025777 ORTHO05D001539 5.8e-40 167.2 87 100.0
Medtr2g079850 Medicago truncatula HOM05D001676 ORTHO05D001539 2.5e-35 151.8 87 90.8
Medtr7g105760 Medicago truncatula HOM05D025777 ORTHO05D001539 3.3e-35 151.4 82 95.1
TPR.G39001 Trifolium pratense HOM05D001676 ORTHO05D001539 6.4e-31 137.1 87 80.5
Ca_01824_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 2.5e-27 125.2 87 74.7
Medtr6g009120 Medicago truncatula HOM05D025777 ORTHO05D001539 1.3e-23 112.8 87 73.6
Medtr8g107170 Medicago truncatula HOM05D025777 ORTHO05D001539 2.2e-23 112.1 60 93.3
Phvul.005G084000 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 2.4e-22 108.6 86 66.3
Medtr6g464960 Medicago truncatula HOM05D002187 ORTHO05D001539 3.5e-21 104.8 87 70.1
Lj3g0015268 Lotus japonicus HOM05D001676 ORTHO05D001539 1.5e-19 99.4 89 64.0
Glyma.13G279600 Glycine max HOM05D001676 ORTHO05D001539 1.9e-19 99.0 89 64.0
Psat5g245760 Pisum sativum HOM05D001676 ORTHO05D001539 2.5e-19 98.6 88 68.2
VMungo1080G1862 Vigna mungo HOM05D001676 ORTHO05D001539 3.3e-19 98.2 88 60.2
Glyma.12G221900 Glycine max HOM05D001676 ORTHO05D001539 1.1e-17 93.2 89 60.7
Medtr6g466340 Medicago truncatula HOM05D002187 ORTHO05D002243 2.6e-16 88.6 48 93.8
Lalb_Chr25g0286571 Lupinus albus HOM05D001676 ORTHO05D001539 2.9e-15 85.1 88 56.8
Duzib213G0977 Durio zibethinus HOM05D001676 ORTHO05D001539 7.8e-13 77.0 79 51.9
Cfa020541 Carpinus fangiana HOM05D001676 ORTHO05D001539 1.1e-11 73.2 78 51.3
CiPaw.11G173700 Carya illinoinensis HOM05D001676 ORTHO05D001539 1.5e-11 72.8 76 50.0
Duzib170G0203 Durio zibethinus HOM05D001676 ORTHO05D001539 1.5e-11 72.8 78 50.0
QL08p019602 Quercus lobata HOM05D001676 ORTHO05D001539 1.9e-11 72.4 76 51.3
Haze_09483 Corylus avellana HOM05D001676 ORTHO05D001539 3.3e-11 71.6 78 50.0
Haze_09487 Corylus avellana HOM05D001676 ORTHO05D001539 3.3e-11 71.6 78 50.0
Gohir.1Z049612 Gossypium hirsutum HOM05D001676 ORTHO05D001539 4.3e-11 71.2 78 46.2
Thecc.07G076300 Theobroma cacao HOM05D001676 ORTHO05D001539 5.6e-11 70.9 78 48.7
arahy.Tifrunner.gnm1.ann1.KG9X9B Arachis hypogaea HOM05D001676 ORTHO05D001539 7.3e-11 70.5 90 54.4
arahy.Tifrunner.gnm1.ann1.FB4L04 Arachis hypogaea HOM05D001676 ORTHO05D001539 1.3e-10 69.7 90 53.3
COL.COLO4_09442 Corchorus olitorius HOM05D001676 ORTHO05D001539 1.6e-10 69.3 77 50.6
Gorai.013G167500 Gossypium raimondii HOM05D001676 ORTHO05D001539 1.6e-10 69.3 78 44.9
RcHm_v2.0_Chr5g0034651 Rosa chinensis HOM05D001676 ORTHO05D001539 1.6e-10 69.3 77 50.6
Atru.chr2.2752 Acer truncatum HOM05D001676 ORTHO05D001539 2.8e-10 68.6 78 50.0
CSS0017655 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 3.6e-10 68.2 77 45.5
CSS0018188 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 3.6e-10 68.2 77 45.5
ClCG11G018250 Citrullus lanatus HOM05D001676 ORTHO05D001539 3.6e-10 68.2 80 48.8
Gohir.D01G053600 Gossypium hirsutum HOM05D001676 ORTHO05D001539 4.8e-10 67.8 83 47.0
Prupe.4G186100 Prunus persica HOM05D001676 ORTHO05D001539 6.2e-10 67.4 77 48.1
Gorai.002G073400 Gossypium raimondii HOM05D001676 ORTHO05D001539 1.4e-09 66.2 78 44.9
CANSAT56G1624 Cannabis sativa HOM05D001676 ORTHO05D001539 2.4e-09 65.5 80 45.0
FAN21G2156 Fragaria x ananassa HOM05D001676 ORTHO05D001539 2.4e-09 65.5 77 49.4
Gohir.A01G066300 Gossypium hirsutum HOM05D001676 ORTHO05D001539 5.3e-09 64.3 77 44.2
Manes.03G113600 Manihot esculenta HOM05D001676 ORTHO05D001539 5.3e-09 64.3 77 49.4
FvH4_3g20630 Fragaria vesca HOM05D001676 ORTHO05D001539 6.9e-09 63.9 77 48.1
CiPaw.12G121300 Carya illinoinensis HOM05D001676 ORTHO05D001539 9.0e-09 63.5 75 46.7
FAN11G2190 Fragaria x ananassa HOM05D001676 ORTHO05D001539 9.0e-09 63.5 77 48.1
FAN16G2678 Fragaria x ananassa HOM05D001676 ORTHO05D001539 1.2e-08 63.2 77 48.1
MD11G1241400 Malus domestica HOM05D001676 ORTHO05D001539 1.2e-08 63.2 78 47.4
Potri.001G403700 Populus trichocarpa HOM05D001676 ORTHO05D001539 2.0e-08 62.4 76 51.3
Sabra11G0108500 Salix brachista HOM05D001676 ORTHO05D001539 2.0e-08 62.4 76 51.3
Hma1.2p1_0600F.1_g187090 Hydrangea macrophylla HOM05D001676 ORTHO05D001539 2.6e-08 62.0 89 41.6
Dinv08318 Davidia involucrata HOM05D001676 ORTHO05D001539 4.4e-08 61.2 79 45.6
MD03G1223400 Malus domestica HOM05D001676 ORTHO05D001539 7.6e-08 60.5 77 46.8
Actinidia09985 Actinidia chinensis HOM05D001676 ORTHO05D001539 1.3e-07 59.7 77 46.8
MELO3C016717.2 Cucumis melo HOM05D001676 ORTHO05D001539 1.3e-07 59.7 81 46.9
Potri.011G122900 Populus trichocarpa HOM05D001676 ORTHO05D001539 1.3e-07 59.7 76 48.7
GSVIVG01014394001 Vitis vinifera HOM05D001676 ORTHO05D001539 1.3e-07 59.7 69 47.8
SalBow7G3227 Salvia bowleyana HOM05D001676 ORTHO05D001539 4.9e-07 57.8 72 45.8
THA.LOC104811855 Tarenaya hassleriana HOM05D001676 ORTHO05D001539 4.9e-07 57.8 79 44.3
Oeu008019.1 Olea europaea HOM05D001676 ORTHO05D001539 6.4e-07 57.4 71 42.3
Peaxi162Scf00998g00033 Petunia axillaris HOM05D001676 ORTHO05D001539 6.4e-07 57.4 83 44.6
PGR083G0774 Punica granatum HOM05D001676 ORTHO05D001539 6.4e-07 57.4 55 54.5
Sabra16G0265300 Salix brachista HOM05D001676 ORTHO05D001539 8.4e-07 57.0 76 48.7
Cpa.g.sc80.26 Carica papaya HOM05D001676 ORTHO05D001539 9.3e-06 53.5 76 42.1
Nitab4.5_0010846g0010 Nicotiana tabacum HOM05D001676 ORTHO05D001539 9.3e-06 53.5 78 39.7


User provided reference genes

Program Settings