Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.3e-116 423.3 248 100.0
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 5.7e-101 371.3 257 85.2
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.7e-92 342.0 261 79.3
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 4.4e-77 292.0 261 75.5
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 9.8e-77 290.8 255 68.2
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 6.6e-73 278.1 262 74.4
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 4.7e-71 271.9 261 73.9
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 5.8e-69 265.0 261 71.3
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 3.7e-68 262.3 248 67.3
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.6e-66 255.4 249 64.7
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 2.3e-65 253.1 269 62.8
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.3e-65 253.1 249 63.9
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 6.6e-65 251.5 249 64.7
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-64 250.8 249 63.9
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.5e-64 250.4 249 65.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.9e-64 250.0 248 65.3
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 2.5e-64 249.6 252 66.3
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 4.3e-64 248.8 241 63.9
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.2e-63 247.3 244 66.8
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.4e-62 243.8 249 62.2
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.8e-62 243.4 245 64.5
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 3.1e-62 242.7 253 66.0
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.2e-61 240.7 251 62.9
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 3.4e-61 239.2 252 61.5
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 5.8e-61 238.4 252 62.7
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 9.9e-61 237.7 252 63.1
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.3e-60 237.3 274 63.1
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 2.2e-60 236.5 248 61.3
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 6.4e-60 235.0 253 56.1
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.4e-59 233.8 248 58.9
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 2.4e-59 233.0 249 59.8
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 3.2e-59 232.6 251 60.2
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 9.2e-59 231.1 252 64.7
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.2e-58 230.7 240 60.4
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 1.2e-58 230.7 251 63.7
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.2e-58 230.7 249 58.6
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 3.5e-58 229.2 252 61.9
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 4.6e-58 228.8 251 60.6
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.0e-57 227.6 249 57.8
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.7e-57 226.9 235 60.0
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.3e-57 226.5 252 55.2
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 3.9e-57 225.7 251 58.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.7e-57 224.6 249 55.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 2.5e-56 223.0 242 57.4
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 9.6e-56 221.1 232 56.9
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.2e-55 220.7 253 59.3
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.2e-55 220.7 231 60.6
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.6e-55 220.3 249 57.0
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.6e-55 220.3 252 56.3
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.8e-55 219.5 249 53.8
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.7e-55 218.8 217 65.0
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 8.1e-55 218.0 251 53.8
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.1e-54 217.6 245 56.3
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.4e-54 217.2 248 59.7
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 2.4e-54 216.5 248 55.2
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 4.0e-54 215.7 272 54.0
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.0e-54 215.7 259 55.2
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.0e-54 215.7 243 55.6
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 6.9e-54 214.9 248 59.3
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.4e-53 212.2 237 57.4
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 4.4e-53 212.2 248 55.6
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 5.8e-53 211.8 250 58.4
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.3e-52 210.7 253 53.4
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 2.9e-52 209.5 251 54.6
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 6.4e-52 208.4 232 56.9
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 7.1e-51 204.9 230 53.5
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.2e-50 204.1 246 50.4
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.6e-50 203.8 229 53.3
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 3.5e-50 202.6 229 53.3
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 7.8e-50 201.4 244 52.0
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 7.8e-50 201.4 231 51.5
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 7.8e-50 201.4 256 52.3
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.9e-48 196.8 242 52.9
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 4.3e-48 195.7 168 69.0
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.6e-47 193.7 232 53.4
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.1e-47 191.4 244 52.9
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 4.0e-46 189.1 288 48.6
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 5.3e-46 188.7 262 57.3
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.0e-45 186.8 250 52.0
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 2.4e-43 179.9 242 47.5
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 5.4e-43 178.7 266 48.1
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.2e-42 177.6 235 52.8
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 2.1e-42 176.8 227 48.9
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.0e-41 174.5 245 49.4
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.3e-41 174.1 243 46.1
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.8e-41 173.7 232 53.4
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.8e-41 173.7 268 48.1
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 7.4e-40 168.3 202 55.9
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.4e-38 164.1 169 52.7
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 3.1e-38 162.9 255 50.2
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 9.0e-38 161.4 234 48.7
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.5e-37 160.6 236 46.2
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 4.5e-37 159.1 225 49.3
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 7.6e-37 158.3 258 50.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 9.9e-37 157.9 246 46.7
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.7e-36 157.1 228 45.2
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 2.9e-36 156.4 243 56.0
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.1e-35 154.5 254 47.6
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.1e-35 154.5 238 49.2
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-35 154.1 264 48.5
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 2.5e-35 153.3 250 44.8
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 3.2e-35 152.9 254 50.4
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.5e-35 152.1 254 42.1
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 5.5e-35 152.1 247 52.2
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 7.1e-35 151.8 241 55.2
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.2e-34 151.0 246 52.8
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.6e-34 150.6 222 47.7
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.7e-34 149.8 222 47.7
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 3.5e-34 149.4 225 46.2
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 6.0e-34 148.7 240 55.8
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 7.9e-34 148.3 225 48.4
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 7.9e-34 148.3 225 48.4
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.9e-33 146.0 249 44.2
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 5.1e-33 145.6 169 53.8
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 8.7e-33 144.8 273 38.8
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 3.3e-32 142.9 194 51.0
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 4.3e-32 142.5 253 50.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.6e-31 140.6 216 48.1
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 2.8e-31 139.8 257 51.0
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 2.8e-31 139.8 257 51.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 3.7e-31 139.4 236 44.5
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 8.2e-31 138.3 232 44.8
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 8.2e-31 138.3 269 46.1
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-30 137.5 259 45.6
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-30 137.5 259 45.6
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-30 137.5 234 44.9
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 6.9e-30 135.2 254 52.0
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.0e-29 133.7 256 49.2
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.7e-28 130.6 275 48.4
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.1e-27 127.9 251 51.4
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 3.2e-27 126.3 76 93.4
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 5.5e-27 125.6 254 50.0
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 3.9e-25 119.4 246 35.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.1e-24 117.9 154 48.1
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 2.5e-24 116.7 250 48.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.6e-23 114.0 170 42.9
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 2.2e-23 113.6 253 36.0
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.6e-21 106.7 165 52.7
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.1e-19 101.3 155 43.2
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.3e-16 89.7 90 55.6
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.1e-14 84.7 90 54.4
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.9e-11 73.9 150 50.0
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 4.8e-07 59.3 143 31.5
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 4.1e-06 56.2 154 35.7
MSTRG.7055 Avicennia marina HOM05D003370 ORTHO05D003848 5.3e-06 55.8 226 26.5
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.3e-06 55.8 31 74.2
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 5.3e-06 55.8 150 35.3
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 7.0e-06 55.5 146 32.2


User provided reference genes

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