Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 5.1e-30 133.7 63 100.0
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.4e-27 125.6 63 92.1
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.8e-27 125.2 63 92.1
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.2e-26 122.5 62 88.7
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.5e-26 122.1 61 91.8
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 1.3e-25 119.0 63 85.7
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.9e-25 117.9 63 85.7
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.9e-25 117.9 63 85.7
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 8.4e-25 116.3 63 82.5
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 1.1e-24 115.9 59 88.1
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.4e-24 115.5 63 84.1
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.4e-24 115.5 63 82.5
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 2.5e-24 114.8 56 89.3
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.5e-24 114.8 63 85.7
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 3.2e-24 114.4 63 81.0
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 7.1e-24 113.2 59 83.1
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.2e-23 112.5 62 80.6
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 81.0
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 79.4
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 79.4
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 79.4
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 4.6e-23 110.5 59 86.4
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.6e-23 110.5 61 82.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 4.6e-23 110.5 64 79.7
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 6.0e-23 110.2 64 81.2
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 6.0e-23 110.2 63 79.4
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.0e-23 110.2 63 79.4
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 7.9e-23 109.8 61 78.7
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 7.9e-23 109.8 58 82.8
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.9e-23 109.8 58 82.8
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.9e-23 109.8 58 82.8
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.9e-23 109.8 58 82.8
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 76.2
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 82.5
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.3e-22 109.0 62 77.4
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.3e-22 108.2 63 81.0
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 2.3e-22 108.2 64 78.1
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 2.3e-22 108.2 57 82.5
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 77.8
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 3.0e-22 107.8 60 80.0
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 3.9e-22 107.5 64 79.7
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 3.9e-22 107.5 62 77.4
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 3.9e-22 107.5 63 79.4
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 3.9e-22 107.5 63 79.4
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 77.8
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.1e-22 107.1 62 79.0
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 6.7e-22 106.7 59 78.0
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 6.7e-22 106.7 63 79.4
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 6.7e-22 106.7 63 79.4
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 77.8
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-21 105.9 60 78.3
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-21 105.9 60 78.3
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.1e-21 105.9 63 74.6
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.5e-21 105.5 63 77.8
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.5e-21 105.5 63 74.6
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.9e-21 105.1 62 75.8
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.5e-21 104.8 63 74.6
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 3.3e-21 104.4 59 76.3
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 3.3e-21 104.4 61 80.3
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 5.7e-21 103.6 65 75.4
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 7.4e-21 103.2 54 85.2
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 7.4e-21 103.2 54 85.2
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 7.4e-21 103.2 62 80.6
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 1.3e-20 102.4 58 81.0
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.1e-20 101.7 63 73.0
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 4.8e-20 100.5 60 76.7
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 4.8e-20 100.5 63 74.6
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 4.8e-20 100.5 61 75.4
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.4e-19 99.0 55 78.2
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.4e-19 99.0 57 77.2
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.4e-19 99.0 59 74.6
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.8e-19 98.6 68 70.6
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 2.4e-19 98.2 58 77.6
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 2.4e-19 98.2 63 68.3
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 4.1e-19 97.4 61 73.8
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 6.9e-19 96.7 63 68.3
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.2e-18 95.9 62 74.2
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.2e-18 95.9 63 74.6
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 2.0e-18 95.1 63 73.0
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-18 95.1 63 68.3
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-18 95.1 63 68.3
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.0e-18 95.1 63 68.3
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.0e-18 95.1 62 66.1
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 3.4e-18 94.4 63 73.0
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 4.5e-18 94.0 57 77.2
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 4.5e-18 94.0 60 73.3
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 5.9e-18 93.6 63 71.4
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.9e-18 93.6 61 73.8
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.9e-18 93.6 61 73.8
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 5.9e-18 93.6 61 73.8
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 5.9e-18 93.6 55 72.7
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 5.9e-18 93.6 61 68.9
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 5.9e-18 93.6 62 64.5
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.6e-18 93.2 53 73.6
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 1.3e-17 92.4 63 69.8
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 1.3e-17 92.4 63 66.7
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 1.3e-17 92.4 61 72.1
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.7e-17 92.0 59 64.4
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 2.2e-17 91.7 62 69.4
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 5.0e-17 90.5 58 69.0
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 8.5e-17 89.7 55 70.9
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 1.1e-16 89.4 66 65.2
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.1e-16 89.4 64 67.2
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 1.4e-16 89.0 58 69.0
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.5e-16 88.2 62 61.3
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.5e-16 88.2 54 68.5
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.2e-16 87.8 62 61.3
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 5.5e-16 87.0 52 75.0
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 5.5e-16 87.0 63 63.5
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 2.1e-15 85.1 60 65.0
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.7e-15 84.7 54 64.8
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.6e-15 84.3 59 67.8
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 1.3e-14 82.4 65 58.5
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 3.0e-14 81.3 53 67.9
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 5.1e-14 80.5 49 75.5
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 5.1e-14 80.5 55 67.3
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 6.7e-14 80.1 53 62.3
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 1.9e-13 78.6 56 62.5
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 9.7e-13 76.3 58 63.8
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 2.8e-12 74.7 54 63.0
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 6.3e-12 73.6 59 62.7
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 6.3e-12 73.6 56 58.9
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.1e-11 72.8 54 63.0
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 1.1e-11 72.8 46 73.9
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 2.9e-09 64.7 81 42.0
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 5.0e-09 63.9 49 57.1
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 4.2e-08 60.8 51 56.9
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.7e-07 58.2 53 52.8
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 6.1e-07 57.0 55 45.5
Pp3c4_16391 Physcomitrium patens HOM05D002570 ORTHO05D002689 1.4e-06 55.8 61 42.6
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.3e-06 55.1 34 67.6
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 3.9e-06 54.3 58 37.9
SEGI_15030 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 8.8e-06 53.1 64 42.2


User provided reference genes

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