Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 3.8e-177 624.8 331 100.0
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 8.9e-142 507.3 345 79.4
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 3.0e-137 492.3 330 80.6
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 1.2e-125 453.8 344 75.6
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.2e-125 453.8 338 71.6
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 5.4e-123 444.9 342 72.5
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 3.5e-122 442.2 339 71.7
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 6.2e-119 431.4 342 73.7
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 5.0e-100 368.6 266 77.4
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.2e-85 320.9 338 54.1
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 2.6e-80 303.1 323 57.0
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.7e-79 300.4 355 50.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 3.2e-75 286.2 337 51.3
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.1e-74 283.5 328 55.2
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 6.1e-74 282.0 338 50.3
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.5e-72 277.3 339 50.4
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.4e-70 270.8 349 49.9
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 9.1e-70 268.1 351 49.3
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.7e-69 266.5 353 49.0
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 2.2e-68 263.5 341 52.8
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 9.4e-67 258.1 351 47.6
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 3.6e-66 256.1 349 46.7
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.0e-65 254.6 354 51.1
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 2.3e-65 253.4 354 51.1
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 6.3e-63 245.4 327 48.0
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 6.3e-63 245.4 343 47.8
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 6.3e-63 245.4 352 46.9
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 1.2e-61 241.1 350 46.6
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 6.5e-60 235.3 350 45.7
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 2.5e-59 233.4 313 49.2
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.2e-58 231.1 351 46.2
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 8.8e-57 224.9 308 48.4
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 2.0e-56 223.8 345 45.5
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 2.6e-56 223.4 345 44.9
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 3.4e-56 223.0 348 44.0
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 4.4e-56 222.6 330 45.5
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 4.4e-56 222.6 356 42.1
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.5e-56 221.9 360 43.3
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.2e-55 220.3 348 43.7
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.8e-55 219.9 330 45.2
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 4.9e-55 219.2 263 51.3
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.4e-54 216.9 361 42.1
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 5.4e-54 215.7 345 42.9
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 7.0e-54 215.3 372 41.9
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 2.7e-53 213.4 340 42.6
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.7e-53 213.4 315 45.4
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 8.6e-52 208.4 352 44.0
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.5e-51 207.6 365 41.4
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 4.3e-51 206.1 352 41.5
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 5.6e-51 205.7 340 42.1
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.8e-50 203.4 329 43.8
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 6.1e-50 202.2 352 41.8
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 8.0e-50 201.8 350 44.0
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.4e-49 201.1 336 44.6
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 5.2e-49 199.1 338 42.0
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 6.8e-49 198.7 336 42.6
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.2e-48 198.0 354 41.0
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.2e-48 198.0 356 39.9
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 1.5e-48 197.6 315 46.3
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 2.6e-48 196.8 346 41.0
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 3.4e-48 196.4 333 42.3
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 3.4e-48 196.4 319 44.8
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 5.7e-48 195.7 344 40.4
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 5.7e-48 195.7 269 43.9
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 7.5e-48 195.3 295 43.4
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 7.5e-48 195.3 350 41.4
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.7e-47 194.1 358 40.5
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 2.9e-47 193.4 296 43.6
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 3.7e-47 193.0 339 43.7
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 6.4e-47 192.2 344 42.2
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 8.3e-47 191.8 339 39.8
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.1e-46 191.4 336 41.7
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 2.4e-46 190.3 340 40.0
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 2.4e-46 190.3 313 45.7
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 3.2e-46 189.9 342 39.5
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 3.2e-46 189.9 288 45.1
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 5.4e-46 189.1 346 39.9
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 7.0e-46 188.7 332 41.3
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.7e-45 186.8 342 42.4
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 3.5e-45 186.4 329 41.9
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 5.9e-45 185.7 349 40.7
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 5.9e-45 185.7 309 43.4
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.3e-44 184.5 350 40.6
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.7e-44 184.1 334 40.4
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.3e-44 183.7 354 41.0
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 3.0e-44 183.3 341 41.1
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 5.0e-44 182.6 279 46.2
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 5.0e-44 182.6 341 40.8
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 6.6e-44 182.2 216 51.9
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 6.6e-44 182.2 340 39.7
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 6.6e-44 182.2 308 43.5
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 1.1e-43 181.4 303 44.9
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.1e-43 181.4 344 38.4
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.5e-43 181.0 282 44.7
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.9e-43 180.6 352 40.3
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 7.3e-43 178.7 348 40.2
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.2e-42 177.9 335 40.3
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 3.6e-42 176.4 282 42.6
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 3.6e-42 176.4 358 40.8
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 8.0e-42 175.3 331 41.1
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.4e-41 174.5 341 40.2
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 2.3e-41 173.7 339 39.8
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.3e-41 173.7 336 40.5
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.0e-41 172.9 339 40.1
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 8.9e-41 171.8 348 38.5
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.5e-40 171.0 344 39.2
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 2.0e-40 170.6 354 40.1
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 2.9e-39 166.8 307 42.0
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 3.7e-39 166.4 309 40.5
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 3.7e-39 166.4 266 42.1
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 3.7e-39 166.4 274 44.9
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.4e-38 164.5 309 41.1
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.4e-38 164.5 307 40.4
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.9e-38 164.1 311 40.2
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 2.4e-38 163.7 318 38.7
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 5.4e-38 162.5 300 41.0
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.2e-37 161.4 429 34.5
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 7.8e-37 158.7 208 49.0
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.3e-36 157.9 278 40.6
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.7e-36 157.5 313 39.3
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 2.3e-36 157.1 332 37.3
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.1e-35 154.8 225 46.7
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.5e-35 154.5 314 38.5
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 1.5e-35 154.5 324 39.8
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.9e-35 154.1 215 44.7
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.2e-34 151.4 314 37.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.4e-33 147.9 293 39.6
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 3.1e-33 146.7 354 37.9
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 6.8e-33 145.6 234 43.2
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.6e-32 143.7 273 36.3
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 2.6e-32 143.7 223 46.2
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 2.2e-31 140.6 246 40.2
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.4e-30 137.9 278 35.6
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.1e-29 134.0 227 38.8
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 2.7e-29 133.7 238 39.1
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 3.5e-29 133.3 191 46.1
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 3.5e-29 133.3 272 38.6
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 7.8e-29 132.1 318 35.8
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.6e-26 123.2 263 36.5
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 3.6e-26 123.2 249 36.5
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 6.2e-26 122.5 315 35.2
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.8e-25 120.9 319 36.1
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.1e-22 111.7 269 35.3
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.4e-22 110.5 87 64.4
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 4.1e-22 109.8 292 32.5
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 7.1e-22 109.0 323 32.5
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 7.8e-21 105.5 61 80.3
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 6.6e-20 102.4 233 39.1
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.2e-18 98.2 164 42.1
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.2e-18 98.2 214 38.3
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 1.6e-18 97.8 63 76.2
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.1e-17 93.6 261 33.0
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 4.4e-16 89.7 294 29.9
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 8.7e-12 75.5 65 56.9
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 7.3e-11 72.4 160 37.5
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 6.4e-07 59.3 53 50.9
Peaxi162Scf00376g00327 Petunia axillaris HOM05D002346 ORTHO05D002452 1.1e-06 58.5 165 31.5
arahy.Tifrunner.gnm1.ann1.5M7JWE Arachis hypogaea HOM05D002346 ORTHO05D002452 1.4e-06 58.2 170 29.4
Potri.012G044900 Populus trichocarpa HOM05D002346 ORTHO05D002452 1.9e-06 57.8 172 31.4
Haze_10914 Corylus avellana HOM05D002346 ORTHO05D002452 2.4e-06 57.4 177 31.6
Glyma.07G041400 Glycine max HOM05D001047 ORTHO05D000768 2.4e-06 57.4 165 29.7
arahy.Tifrunner.gnm1.ann1.23LT4W Arachis hypogaea HOM05D002346 ORTHO05D002452 3.2e-06 57.0 170 29.4
MD13G1030000 Malus domestica HOM05D002346 ORTHO05D002452 3.2e-06 57.0 180 30.6
BolC9t58389H Brassica oleracea HOM05D001047 ORTHO05D000768 4.2e-06 56.6 146 33.6
BcaB06g25850 Brassica carinata HOM05D002346 ORTHO05D002452 5.4e-06 56.2 156 32.1
FAN28G1146 Fragaria x ananassa HOM05D001047 ORTHO05D000768 5.4e-06 56.2 163 30.7
Manes.06G004000 Manihot esculenta HOM05D002346 ORTHO05D002452 5.4e-06 56.2 59 50.8
MSTRG.10497 Avicennia marina HOM05D001047 ORTHO05D000768 7.1e-06 55.8 122 33.6
CiPaw.04G141300 Carya illinoinensis HOM05D001047 ORTHO05D000768 7.1e-06 55.8 139 33.1
FvH4_1g09690 Fragaria vesca HOM05D001047 ORTHO05D000768 7.1e-06 55.8 179 27.4
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 9.3e-06 55.5 127 33.1
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 9.3e-06 55.5 94 46.8
Cpa.g.sc2.215 Carica papaya HOM05D002346 ORTHO05D002452 9.3e-06 55.5 154 31.8
MD02G1105900 Malus domestica HOM05D001047 ORTHO05D000768 9.3e-06 55.5 143 30.1
Potri.008G133400 Populus trichocarpa HOM05D002346 ORTHO05D002452 9.3e-06 55.5 153 33.3
Rhsim03G0226700 Rhododendron simsii HOM05D001047 ORTHO05D000768 9.3e-06 55.5 140 34.3


User provided reference genes

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