Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.1e-92 343.2 169 100.0
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 9.4e-63 243.8 169 77.5
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.6e-62 243.0 169 78.1
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.6e-62 243.0 169 78.1
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 2.1e-62 242.7 169 77.5
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.1e-62 242.7 169 77.5
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 4.7e-62 241.5 169 76.9
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 3.9e-61 238.4 169 74.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 2.0e-60 236.1 172 69.2
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.0e-60 236.1 169 74.6
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.3e-60 235.3 169 74.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.4e-60 235.0 169 73.4
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 5.7e-60 234.6 169 74.0
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 5.7e-60 234.6 169 74.0
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.7e-60 234.6 169 73.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 7.4e-60 234.2 169 73.4
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.3e-59 233.4 169 73.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.7e-59 233.0 169 73.4
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.2e-59 232.6 169 73.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.8e-59 232.3 169 72.8
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 6.3e-59 231.1 169 74.0
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 6.3e-59 231.1 169 72.2
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.3e-59 231.1 169 72.2
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.3e-59 231.1 169 72.2
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 6.3e-59 231.1 169 72.8
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 6.3e-59 231.1 169 74.0
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 6.3e-59 231.1 169 74.0
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 8.2e-59 230.7 169 74.0
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 8.2e-59 230.7 169 74.0
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 8.2e-59 230.7 169 74.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 8.2e-59 230.7 169 72.2
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.8e-58 229.6 192 66.7
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.8e-58 229.6 169 71.0
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.4e-58 229.2 169 72.2
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 3.1e-58 228.8 169 73.4
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.1e-58 228.4 169 71.6
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 4.1e-58 228.4 169 71.6
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 5.3e-58 228.0 169 71.6
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 7.0e-58 227.6 169 71.6
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 9.1e-58 227.3 169 72.8
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.2e-57 226.9 169 71.0
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.2e-57 226.9 169 71.0
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.2e-57 226.9 169 73.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 2.0e-57 226.1 169 71.0
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.6e-57 225.7 169 69.8
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.6e-57 225.7 169 71.0
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 4.5e-57 224.9 169 69.2
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 5.9e-57 224.6 169 70.4
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 5.9e-57 224.6 169 71.0
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.9e-57 224.6 169 72.2
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.3e-56 223.4 169 69.2
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.3e-56 223.4 169 68.6
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 2.2e-56 222.6 169 69.2
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 2.2e-56 222.6 169 68.6
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.2e-56 222.6 169 68.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.9e-56 222.2 170 70.0
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.0e-56 221.5 169 70.4
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.1e-55 220.3 169 67.5
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.1e-55 220.3 169 67.5
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 3.2e-55 218.8 169 68.0
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.2e-55 218.4 169 68.6
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.2e-54 216.9 169 69.8
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.6e-54 216.5 169 68.0
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.7e-54 215.7 159 71.7
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 3.6e-54 215.3 169 67.5
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 3.6e-54 215.3 169 67.5
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.7e-54 214.9 169 69.2
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.7e-54 214.9 169 68.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 5.2e-53 211.5 170 68.8
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 6.7e-53 211.1 169 66.9
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 8.3e-51 204.1 169 63.3
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 3.5e-49 198.7 169 60.4
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 2.2e-48 196.1 169 59.8
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 2.9e-48 195.7 169 58.6
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.9e-47 193.0 169 62.1
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.0e-45 185.7 153 66.0
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.1e-42 177.2 202 54.5
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.2e-41 173.7 157 60.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.5e-41 172.2 138 67.4
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 7.7e-41 171.0 150 61.3
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.7e-40 169.9 169 59.8
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 6.6e-40 167.9 171 58.5
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 9.5e-39 164.1 169 56.8
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.2e-38 163.7 169 58.0
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.6e-38 163.3 138 63.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.7e-38 161.8 138 63.0
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 4.0e-37 158.7 169 56.8
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.2e-37 158.3 169 56.2
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 3.4e-36 155.6 138 59.4
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 3.1e-34 149.1 169 52.1
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.6e-33 146.7 169 49.7
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.5e-31 140.2 71 100.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 4.3e-31 138.7 71 97.2
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 4.3e-31 138.7 71 97.2
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.3e-31 138.7 71 97.2
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.5e-31 137.5 71 95.8
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 3.6e-30 135.6 169 45.6
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 2.3e-29 132.9 71 90.1
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 2.3e-29 132.9 71 91.5
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.3e-29 132.9 71 91.5
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 3.1e-29 132.5 71 90.1
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 4.0e-29 132.1 70 92.9
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.0e-29 132.1 70 92.9
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 5.2e-29 131.7 71 90.1
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 8.9e-29 131.0 71 91.5
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 8.9e-29 131.0 71 91.5
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.5e-28 130.2 71 88.7
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.0e-28 129.8 71 91.5
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.0e-28 129.8 71 91.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.0e-28 129.8 71 91.5
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.0e-28 129.8 71 91.5
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 3.4e-28 129.0 175 40.0
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.4e-28 128.6 113 63.7
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 5.8e-28 128.3 70 90.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 7.5e-28 127.9 71 87.3
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 7.5e-28 127.9 71 87.3
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.3e-27 127.1 71 87.3
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 3.7e-27 125.6 110 62.7
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.7e-27 125.6 63 93.7
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 4.9e-27 125.2 113 62.8
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 4.9e-27 125.2 71 84.5
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 4.9e-27 125.2 71 84.5
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 4.9e-27 125.2 71 84.5
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.4e-26 122.9 71 83.1
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 3.2e-26 122.5 61 93.4
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 5.4e-26 121.7 71 81.7
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 7.0e-26 121.3 71 80.3
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 9.2e-26 120.9 71 80.3
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.2e-25 120.6 71 78.9
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.2e-25 120.6 71 80.3
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.2e-25 120.6 71 78.9
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.6e-25 120.2 71 80.3
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 2.0e-25 119.8 71 80.3
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.0e-25 119.8 169 40.8
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 4.6e-25 118.6 102 61.8
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 7.8e-25 117.9 71 78.9
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.0e-24 117.5 56 100.0
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.0e-24 117.5 56 100.0
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.3e-24 116.3 56 96.4
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 2.3e-24 116.3 161 39.8
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 3.0e-24 115.9 56 96.4
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 3.9e-24 115.5 56 98.2
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 3.9e-24 115.5 56 98.2
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.1e-23 114.0 68 76.5
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.9e-23 113.2 56 96.4
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 3.3e-23 112.5 56 100.0
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 4.3e-23 112.1 57 96.5
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 4.3e-23 112.1 159 44.0
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 5.6e-23 111.7 56 94.6
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 6.8e-21 104.8 138 47.8
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 9.8e-20 100.9 143 44.1
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 5.4e-18 95.1 70 57.1
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.9e-15 86.7 45 93.3
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 5.6e-15 85.1 45 88.9
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 1.8e-13 80.1 40 90.0
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 3.1e-13 79.3 44 84.1
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-10 70.9 96 46.9
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 1.3e-08 63.9 159 30.2
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.1e-07 60.8 29 96.6
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 3.6e-06 55.8 25 96.0


User provided reference genes

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