Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 5.4e-122 441.0 227 100.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 8.6e-104 380.6 224 87.9
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.9e-103 379.4 224 87.9
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 9.6e-103 377.1 224 87.5
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 3.4e-100 368.6 224 86.2
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 4.4e-100 368.2 228 85.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 4.9e-99 364.8 230 84.3
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 3.2e-98 362.1 237 80.6
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.2e-97 360.1 226 83.2
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.6e-97 359.8 231 82.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 3.5e-97 358.6 226 82.7
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 7.8e-97 357.5 226 82.7
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 7.3e-95 350.9 224 82.6
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.6e-94 349.7 224 81.2
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.1e-94 349.4 224 82.1
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.8e-94 349.0 224 82.1
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.1e-93 345.5 225 80.9
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 6.9e-93 344.4 221 82.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 9.0e-93 344.0 225 80.4
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.2e-92 343.6 225 80.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.2e-92 343.6 229 81.2
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.2e-92 343.6 224 81.2
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.0e-92 342.8 224 81.7
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.6e-92 342.4 224 80.4
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.6e-92 342.4 224 81.2
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 2.6e-92 342.4 224 79.9
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 5.8e-92 341.3 224 80.4
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.8e-92 341.3 224 80.4
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 5.8e-92 341.3 224 78.6
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 7.6e-92 340.9 224 81.7
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 9.9e-92 340.5 224 81.2
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 9.9e-92 340.5 226 80.5
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-91 340.1 224 79.9
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.3e-91 340.1 224 80.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.7e-91 339.7 221 80.5
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.2e-91 339.3 224 78.6
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.2e-91 339.3 224 79.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.9e-91 339.0 224 79.9
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.9e-91 339.0 224 81.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.9e-91 338.2 224 79.5
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-90 337.0 224 79.9
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.4e-90 336.7 224 78.6
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.2e-90 335.1 234 78.2
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 5.4e-90 334.7 216 82.9
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 9.3e-90 334.0 218 82.6
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 9.3e-90 334.0 224 79.5
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.2e-89 333.6 224 79.5
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-89 332.8 238 76.5
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.8e-89 330.9 224 75.4
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.3e-88 330.1 224 79.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.3e-88 330.1 224 79.5
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.7e-88 329.7 224 78.6
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 3.9e-88 328.6 225 76.4
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.9e-88 328.6 226 77.9
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 5.1e-88 328.2 221 79.2
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.9e-87 326.2 221 79.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.9e-87 326.2 226 76.5
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 3.3e-87 325.5 221 79.2
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.3e-87 325.5 224 75.9
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 3.3e-87 325.5 224 79.0
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 5.6e-87 324.7 222 78.4
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 9.6e-87 323.9 224 77.7
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 2.1e-86 322.8 219 77.6
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 2.1e-86 322.8 219 77.6
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.1e-86 322.8 219 77.6
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 2.1e-86 322.8 221 78.3
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 2.8e-86 322.4 225 78.2
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 3.6e-86 322.0 224 76.8
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.8e-86 321.6 220 77.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 6.2e-86 321.2 216 78.2
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.1e-86 320.9 220 76.8
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 8.1e-86 320.9 213 77.5
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.4e-85 320.1 225 76.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.8e-85 319.7 225 76.0
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.8e-85 319.7 224 76.8
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 3.1e-85 318.9 215 79.1
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 3.1e-85 318.9 220 76.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.1e-85 318.9 214 78.0
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 5.3e-85 318.2 220 76.4
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 6.9e-85 317.8 224 75.0
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 6.9e-85 317.8 221 76.0
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 6.9e-85 317.8 204 82.4
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 6.9e-85 317.8 221 77.4
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.0e-84 316.2 225 76.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 3.4e-84 315.5 224 75.9
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 5.8e-84 314.7 224 75.0
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 5.8e-84 314.7 199 82.9
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 5.8e-84 314.7 210 79.0
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.3e-83 313.5 196 83.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-83 313.5 225 75.1
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.3e-83 313.5 225 76.4
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-83 313.2 207 79.7
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.7e-83 313.2 220 75.0
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-83 313.2 224 74.1
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.2e-83 312.8 220 75.9
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.2e-83 312.8 224 74.1
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.2e-83 312.8 195 82.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.9e-83 311.6 216 75.9
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 4.9e-83 311.6 238 71.4
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.4e-83 311.2 238 71.4
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 8.4e-83 310.8 221 71.5
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.1e-82 310.5 224 74.6
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.9e-82 309.7 225 74.7
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.2e-82 308.5 227 74.4
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-81 307.0 224 74.1
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.2e-81 307.0 264 67.8
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-81 306.2 224 72.3
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.7e-81 305.8 210 77.1
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.0e-80 303.9 224 71.9
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.5e-79 300.1 209 77.0
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.5e-79 300.1 227 73.1
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.9e-79 299.7 187 84.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.3e-79 298.5 196 77.6
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 5.6e-79 298.1 212 76.9
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 8.1e-78 294.3 214 73.8
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 4.0e-77 292.0 211 73.0
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 6.9e-77 291.2 222 73.0
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.9e-75 285.8 226 70.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.1e-74 283.9 234 67.1
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.9e-74 283.1 217 70.0
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.9e-74 283.1 213 68.5
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.1e-73 279.6 219 70.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 5.7e-71 271.6 206 72.8
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 9.0e-69 264.2 205 70.2
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 3.4e-68 262.3 199 68.3
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.2e-67 259.6 159 84.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 8.4e-67 257.7 161 82.0
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 2.5e-66 256.1 203 64.5
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.1e-65 251.5 159 81.8
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 6.1e-65 251.5 203 61.6
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.9e-65 251.1 211 62.1
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.3e-64 249.6 211 64.0
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 8.7e-64 247.7 209 60.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 4.3e-63 245.4 212 60.4
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.3e-63 245.4 220 62.7
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.5e-59 231.1 159 74.2
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.0e-55 219.9 168 67.3
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 2.8e-54 216.1 160 68.1
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.7e-54 215.7 171 67.8
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.1e-53 212.6 130 82.3
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 9.7e-47 191.0 145 71.7
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.8e-45 186.8 227 44.9
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 9.1e-45 184.5 121 81.8
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.7e-44 181.4 151 63.6
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 7.7e-44 181.4 238 51.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 4.7e-41 172.2 158 62.7
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.6e-36 157.1 105 73.3
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.8e-30 135.6 98 75.5
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.1e-29 134.4 81 77.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-29 134.4 82 82.9
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 4.5e-28 129.0 96 68.8
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-26 124.4 64 92.2
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 9.8e-15 84.7 66 69.7
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.4e-13 80.9 56 75.0
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-12 77.8 88 52.3
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-11 73.9 63 61.9
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.0e-07 60.5 67 61.2
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.9e-06 56.6 49 61.2


User provided reference genes

Program Settings