Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 3.6e-120 434.9 209 100.0
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.4e-84 316.6 216 74.5
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.4e-84 316.6 216 74.5
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 6.2e-56 221.5 217 55.3
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 3.5e-51 205.7 214 53.7
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.9e-49 199.9 218 50.0
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 4.4e-46 188.7 212 50.5
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 1.5e-38 163.7 182 48.9
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 2.8e-24 116.3 166 44.0
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 6.0e-19 98.6 132 41.7
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 7.9e-19 98.2 133 42.1
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.0e-18 97.8 197 34.5
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 1.0e-18 97.8 133 42.1
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 1.8e-18 97.1 138 39.9
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 1.8e-18 97.1 132 41.7
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 2.3e-18 96.7 133 37.6
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 2.3e-18 96.7 134 39.6
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 8.7e-18 94.7 137 40.9
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 1.1e-17 94.4 132 40.2
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 3.3e-17 92.8 130 40.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 4.3e-17 92.4 133 38.3
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 7.4e-17 91.7 134 37.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 2.1e-16 90.1 134 40.3
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 2.1e-16 90.1 132 36.4
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 2.8e-16 89.7 133 38.3
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 3.7e-16 89.4 133 36.1
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 3.7e-16 89.4 64 64.1
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 8.2e-16 88.2 134 35.8
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.1e-15 87.8 165 35.8
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 1.1e-15 87.8 133 36.1
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.4e-15 87.4 134 37.3
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.4e-15 87.4 134 36.6
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.8e-15 87.0 134 37.3
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 2.4e-15 86.7 135 37.0
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 2.4e-15 86.7 134 38.1
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 2.4e-15 86.7 134 38.1
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 3.1e-15 86.3 133 38.3
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 5.3e-15 85.5 133 37.6
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 6.9e-15 85.1 134 34.3
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 9.0e-15 84.7 133 38.3
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 1.2e-14 84.3 134 35.8
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 2.0e-14 83.6 134 36.6
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 2.0e-14 83.6 133 37.6
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 2.0e-14 83.6 133 36.8
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 2.6e-14 83.2 134 38.8
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 2.6e-14 83.2 133 37.6
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 3.4e-14 82.8 136 36.8
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 5.8e-14 82.0 133 36.8
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 7.6e-14 81.6 133 36.8
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 7.6e-14 81.6 132 35.6
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.0e-13 81.3 129 37.2
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.0e-13 81.3 129 37.2
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.2e-13 80.1 133 33.8
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 2.2e-13 80.1 54 68.5
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 2.2e-13 80.1 133 37.6
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.9e-13 79.7 129 36.4
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 2.9e-13 79.7 133 33.1
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 5.0e-13 79.0 133 33.8
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 5.0e-13 79.0 132 36.4
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 6.5e-13 78.6 134 35.1
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 8.4e-13 78.2 132 37.1
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 8.4e-13 78.2 132 33.3
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 8.4e-13 78.2 132 33.3
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.1e-12 77.8 134 36.6
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.4e-12 77.4 135 37.0
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.4e-12 77.4 129 34.1
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 1.9e-12 77.0 132 34.1
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 2.5e-12 76.6 133 35.3
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 2.5e-12 76.6 132 35.6
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 5.5e-12 75.5 132 32.6
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 7.1e-12 75.1 133 33.1
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 7.1e-12 75.1 133 33.1
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 9.3e-12 74.7 133 34.6
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 9.3e-12 74.7 133 34.6
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 9.3e-12 74.7 135 34.8
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.2e-11 74.3 129 32.6
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.1e-11 73.6 129 34.1
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.1e-11 73.6 129 34.1
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.1e-11 73.6 136 30.1
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 3.5e-11 72.8 135 33.3
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 4.6e-11 72.4 136 33.8
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 4.6e-11 72.4 135 34.1
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 6.1e-11 72.0 132 31.8
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 6.1e-11 72.0 132 31.8
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 6.1e-11 72.0 135 33.3
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 6.7e-10 68.6 153 29.4
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 8.7e-10 68.2 129 33.3
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 4.3e-09 65.9 138 29.7
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 2.8e-08 63.2 105 41.0
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.8e-07 60.5 228 25.9


User provided reference genes

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