Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.2e-125 453.4 258 100.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 4.6e-85 318.5 214 73.8
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.8e-82 309.3 205 77.6
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 6.2e-82 308.1 208 75.5
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.6e-80 302.8 206 79.1
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 3.4e-80 302.4 206 74.8
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 9.9e-80 300.8 207 85.5
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.3e-79 300.4 207 76.3
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 8.4e-79 297.7 206 81.1
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 8.4e-79 297.7 205 77.1
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 1.4e-78 297.0 208 73.1
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 2.1e-74 283.1 207 84.1
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.2e-72 277.3 199 79.4
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 1.2e-72 277.3 204 76.0
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.2e-72 277.3 204 68.6
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 2.6e-72 276.2 204 68.6
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 5.8e-72 275.0 207 71.0
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 1.7e-71 273.5 206 69.9
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.7e-71 273.5 204 68.6
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 2.2e-71 273.1 213 73.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.9e-71 272.7 204 69.1
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.9e-71 272.7 214 66.8
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 2.9e-71 272.7 204 77.9
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 6.4e-71 271.6 204 77.5
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 6.4e-71 271.6 204 79.9
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 6.4e-71 271.6 204 71.1
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 8.4e-71 271.2 205 71.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 1.4e-70 270.4 190 80.5
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.4e-70 270.4 204 73.0
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 1.9e-70 270.0 204 65.2
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 2.4e-70 269.6 205 71.7
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.2e-70 269.2 213 68.1
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.2e-70 269.2 204 71.1
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 3.2e-70 269.2 204 81.9
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 5.4e-70 268.5 204 67.6
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 9.3e-70 267.7 205 74.1
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 9.3e-70 267.7 207 68.6
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 9.3e-70 267.7 204 71.6
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.2e-69 267.3 204 73.0
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.6e-69 266.9 209 67.0
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 2.7e-69 266.2 204 70.6
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 2.7e-69 266.2 205 72.2
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 4.6e-69 265.4 195 73.8
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 4.6e-69 265.4 205 66.3
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.0e-69 265.0 205 67.3
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.9e-69 264.6 206 67.5
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 2.3e-68 263.1 211 76.8
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 3.0e-68 262.7 204 66.7
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.5e-67 260.4 205 65.9
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.5e-67 260.4 193 80.3
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.5e-67 260.4 204 74.5
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.3e-67 259.2 197 78.2
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 4.3e-67 258.8 190 82.6
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 4.3e-67 258.8 190 78.9
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 9.6e-67 257.7 205 65.4
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 9.6e-67 257.7 197 78.7
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.3e-66 257.3 192 78.6
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.1e-66 256.5 182 86.3
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 8.1e-66 254.6 186 79.6
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.4e-65 253.8 187 67.4
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.4e-65 253.8 199 76.4
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.8e-65 253.4 204 65.7
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 1.8e-65 253.4 203 68.0
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 3.1e-65 252.7 143 83.2
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 3.1e-65 252.7 204 74.0
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 4.0e-65 252.3 204 73.5
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 5.3e-65 251.9 199 77.9
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 6.9e-65 251.5 131 89.3
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 9.0e-65 251.1 130 90.0
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 9.0e-65 251.1 130 90.0
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.2e-64 250.8 145 83.4
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.5e-64 250.4 216 61.1
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.5e-64 250.4 210 74.8
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 2.6e-64 249.6 154 78.6
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 5.8e-64 248.4 132 88.6
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 5.8e-64 248.4 202 75.2
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 7.6e-64 248.1 141 85.1
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 9.9e-64 247.7 143 82.5
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 1.7e-63 246.9 135 85.9
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.7e-63 246.9 206 69.4
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 2.2e-63 246.5 140 85.0
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 2.2e-63 246.5 132 87.1
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 4.9e-63 245.4 210 61.4
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 4.9e-63 245.4 199 69.3
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.4e-63 244.6 141 84.4
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 1.1e-62 244.2 193 66.3
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 5.5e-62 241.9 205 64.9
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 9.3e-62 241.1 141 83.7
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.2e-61 240.7 146 80.8
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.2e-61 240.7 146 80.8
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.2e-61 240.7 189 80.4
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.6e-61 240.4 188 66.5
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 4.6e-61 238.8 187 79.7
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 4.6e-61 238.8 211 73.0
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.3e-60 237.3 146 80.1
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.3e-60 237.3 199 73.4
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.8e-60 236.9 145 79.3
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 2.3e-60 236.5 195 64.6
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.5e-59 233.8 187 69.5
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 1.9e-59 233.4 208 69.7
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 4.3e-59 232.3 204 72.1
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.4e-59 231.5 146 78.1
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.1e-57 227.6 127 80.3
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.0e-56 223.4 191 72.3
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 5.8e-56 221.9 203 70.9
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 5.8e-56 221.9 205 69.3
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.1e-53 213.4 207 60.9
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 7.9e-53 211.5 127 81.9
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 3.0e-52 209.5 124 79.0
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 5.7e-51 205.3 125 76.0
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 7.4e-51 204.9 205 55.1
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 1.4e-49 200.7 156 71.2
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 2.9e-47 193.0 116 76.7
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 3.8e-47 192.6 206 61.7
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.8e-47 192.6 118 77.1
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 5.0e-47 192.2 160 76.9
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 8.4e-47 191.4 106 83.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.1e-45 186.8 91 93.4
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.3e-42 177.6 160 59.4
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 3.7e-34 149.4 82 81.7
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.5e-30 136.7 204 51.5
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 2.7e-29 133.3 122 75.4
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.0e-28 131.3 101 56.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 4.1e-25 119.4 122 51.6
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 9.1e-25 118.2 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.9e-22 110.5 93 53.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.0e-20 103.2 106 47.2
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 7.5e-19 98.6 206 48.1
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-17 92.4 83 55.4
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 2.5e-14 83.6 113 38.9
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 8.0e-13 78.6 36 91.7
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.0e-12 78.2 57 64.9
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 9.8e-11 71.6 85 47.1
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.0e-09 65.5 107 45.8
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.8e-07 59.7 86 67.4
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.1e-06 58.2 83 43.4
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 5.5e-06 55.8 34 70.6


User provided reference genes

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