Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 0.0e+00 1251.5 643 100.0
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 3.7e-253 878.2 684 74.7
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 3.1e-191 672.5 629 66.3
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 7.4e-185 651.4 677 60.7
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 2.8e-176 622.9 706 57.5
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 1.8e-175 620.2 718 56.5
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.5e-172 610.5 698 56.4
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 1.3e-168 597.4 719 55.6
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 1.3e-160 570.9 693 54.0
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 4.3e-148 529.3 707 52.6
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 6.8e-138 495.4 722 49.4
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.2e-134 484.6 742 50.3
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.5e-129 467.6 730 48.9
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 2.1e-126 457.2 755 49.0
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 3.5e-126 456.4 723 49.2
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 5.6e-124 449.1 743 48.9
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 1.3e-115 421.4 679 47.0
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 4.3e-108 396.4 643 47.1
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 9.6e-108 395.2 702 44.0
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 6.0e-102 375.9 745 41.2
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 1.3e-96 358.2 739 41.5
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 5.5e-95 352.8 733 39.4
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.0e-93 348.6 744 40.7
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 8.2e-91 339.0 750 39.2
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 8.2e-91 339.0 742 39.4
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 9.0e-90 335.5 690 41.4
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.2e-86 325.1 781 39.2
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 2.3e-85 320.9 749 38.9
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.3e-84 317.0 734 38.4
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 1.8e-82 311.2 723 37.6
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 9.0e-82 308.9 678 40.0
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 1.2e-81 308.5 728 36.5
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 2.6e-81 307.4 725 37.5
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 4.2e-79 300.1 698 39.0
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 1.2e-78 298.5 674 40.5
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.6e-78 298.1 749 38.1
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.4e-77 295.0 698 38.7
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.4e-77 295.0 698 38.7
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.8e-77 294.7 699 38.8
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.7e-76 289.7 699 38.5
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 5.7e-76 289.7 725 36.8
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 9.7e-76 288.9 702 37.0
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.8e-75 287.3 734 37.1
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 4.8e-75 286.6 730 37.1
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 6.3e-75 286.2 702 37.2
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.4e-74 285.0 682 39.0
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 9.1e-74 282.3 745 36.8
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 1.2e-73 282.0 742 36.4
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 1.5e-73 281.6 721 37.3
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 7.7e-73 279.3 687 35.5
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.3e-72 278.5 752 34.2
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.8e-72 276.9 686 35.3
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 4.2e-71 273.5 754 36.5
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 2.1e-70 271.2 697 36.3
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.6e-70 270.4 737 34.9
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.0e-69 268.9 753 34.7
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 4.4e-68 263.5 716 36.2
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.3e-67 261.9 743 33.9
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.8e-67 260.8 750 36.3
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 3.7e-67 260.4 789 36.5
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.8e-66 258.1 687 34.6
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.5e-65 253.8 605 38.8
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 1.3e-64 251.9 707 37.1
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 2.2e-64 251.1 715 35.2
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 4.2e-63 246.9 632 38.3
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 2.1e-62 244.6 747 33.9
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.0e-61 240.4 732 35.2
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 5.2e-61 240.0 697 34.3
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 6.7e-61 239.6 784 33.8
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 6.7e-61 239.6 764 32.3
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 5.7e-60 236.5 722 34.9
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 7.5e-60 236.1 777 34.7
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.3e-59 235.3 668 34.7
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 2.2e-59 234.6 483 41.0
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 3.7e-59 233.8 698 35.1
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 1.2e-57 228.8 695 35.3
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.9e-55 221.5 711 31.9
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 2.5e-55 221.1 738 32.9
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 5.5e-55 219.9 287 55.4
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 2.1e-54 218.0 734 33.2
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 3.6e-54 217.2 802 32.3
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.4e-53 215.3 703 32.9
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 2.3e-53 214.5 722 32.7
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 3.0e-53 214.2 718 32.5
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.5e-52 211.8 705 31.9
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 2.6e-52 211.1 649 33.7
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 4.4e-52 210.3 698 32.8
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 5.7e-52 209.9 718 33.8
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 2.2e-51 208.0 675 31.4
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.2e-51 208.0 710 32.3
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 2.8e-51 207.6 612 35.5
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 2.4e-50 204.5 707 31.0
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 7.0e-50 203.0 716 31.6
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 9.1e-50 202.6 718 31.2
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 6.5e-48 196.4 718 31.8
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 5.5e-47 193.4 673 33.3
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 8.8e-45 186.0 728 29.7
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 1.5e-44 185.3 474 38.0
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.6e-44 184.5 701 30.2
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 5.7e-44 183.3 683 30.2
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 4.9e-43 180.3 597 32.5
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.3e-43 179.9 685 31.1
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 1.4e-42 178.7 778 31.7
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.4e-42 178.7 714 32.2
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.4e-42 177.9 654 30.4
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 3.1e-42 177.6 655 31.1
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 7.0e-42 176.4 682 29.3
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 9.2e-42 176.0 716 29.5
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 3.5e-41 174.1 660 32.1
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 4.5e-41 173.7 673 31.5
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 7.7e-41 172.9 704 32.2
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 2.3e-40 171.4 622 33.1
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 3.8e-40 170.6 720 29.9
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 1.1e-39 169.1 707 30.7
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 2.5e-39 167.9 593 32.2
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 9.5e-39 166.0 573 34.0
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 5.2e-37 160.2 713 28.9
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.5e-36 158.7 708 30.5
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 4.4e-36 157.1 685 31.1
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 7.5e-36 156.4 683 31.6
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.9e-35 154.5 660 30.9
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 7.0e-34 149.8 637 30.6
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 1.6e-33 148.7 663 30.5
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.7e-32 145.2 693 28.6
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 1.1e-31 142.5 230 43.5
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 3.3e-31 141.0 690 29.6
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 7.3e-31 139.8 682 28.7
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.2e-30 139.0 639 28.6
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.3e-29 134.8 669 29.4
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.2e-25 122.5 637 28.7
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 6.0e-25 120.2 188 45.2
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 5.0e-24 117.1 628 28.8
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 1.9e-23 115.2 537 30.5
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.6e-22 110.9 275 34.9
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 4.7e-22 110.5 180 47.2
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 4.7e-22 110.5 295 35.6
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.1e-21 107.8 473 31.5
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 1.2e-20 105.9 222 41.0
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 2.0e-20 105.1 254 39.0
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.4e-20 104.4 479 29.6
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 1.3e-19 102.4 107 60.7
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 1.7e-19 102.1 107 60.7
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.1e-18 99.4 283 32.5
VMungo0720G0588 Vigna mungo HOM05D003765 ORTHO05D004561 7.1e-18 96.7 188 38.8
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 2.1e-17 95.1 237 32.9
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 1.0e-16 92.8 413 30.3
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 1.3e-16 92.4 408 30.4
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 3.0e-16 91.3 721 24.7
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 8.6e-16 89.7 393 29.8
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 1.9e-15 88.6 470 28.5
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.9e-15 88.6 674 26.1
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 9.5e-15 86.3 470 28.3
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 1.6e-14 85.5 341 32.3
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 2.8e-14 84.7 299 33.1
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 3.6e-14 84.3 407 29.7
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 3.6e-14 84.3 341 32.0
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 6.2e-14 83.6 287 33.4
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 4.0e-13 80.9 462 27.3
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 5.2e-13 80.5 108 42.6
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 6.8e-13 80.1 433 28.9
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 6.8e-13 80.1 422 29.9
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 8.9e-13 79.7 428 29.2
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 8.9e-13 79.7 428 29.2
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 2.6e-12 78.2 184 31.0
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 3.4e-12 77.8 184 31.0
Zm00001eb418620 Zea mays HOM05D003765 ORTHO05D004561 4.4e-12 77.4 133 38.3
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 7.6e-12 76.6 369 26.3
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 2.9e-11 74.7 413 26.9
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 1.9e-10 72.0 424 25.9
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 5.4e-10 70.5 186 25.8
Duzib205G0479 Durio zibethinus HOM05D003765 ORTHO05D004561 1.6e-09 68.9 92 44.6
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 3.5e-09 67.8 371 27.0
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 6.0e-09 67.0 366 29.0
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 1.0e-08 66.2 594 26.1
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 5.1e-08 63.9 379 30.1
Duzib150G0343 Durio zibethinus HOM05D002515 ORTHO05D002722 3.3e-07 61.2 173 28.9
COL.COLO4_18507 Corchorus olitorius HOM05D002515 ORTHO05D002722 9.6e-07 59.7 167 28.7
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 2.1e-06 58.5 285 31.9
Atru.chr3.3898 Acer truncatum HOM05D002515 ORTHO05D002722 3.6e-06 57.8 173 26.0
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 4.7e-06 57.4 167 26.9
Oeu054145.1 Olea europaea HOM05D002515 ORTHO05D002722 8.1e-06 56.6 88 37.5


User provided reference genes

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