Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g101400 Medicago truncatula HOM05D005936 ORTHO05D007967 3.5e-161 571.6 303 100.0
TPR.G17430 Trifolium pratense HOM05D005936 ORTHO05D007967 6.0e-153 544.3 303 94.1
LjContig00238g0017909 Lotus japonicus HOM05D005936 ORTHO05D007967 9.3e-146 520.4 303 91.1
Lalb_Chr21g0304951 Lupinus albus HOM05D005936 ORTHO05D007967 3.3e-143 511.9 303 89.8
Phvul.007G066600 Phaseolus vulgaris HOM05D005936 ORTHO05D007967 5.3e-141 504.6 303 86.1
Glyma.10G238800 Glycine max HOM05D005936 ORTHO05D007967 6.9e-141 504.2 303 86.8
VMungo0720G1210 Vigna mungo HOM05D005936 ORTHO05D007967 3.4e-140 501.9 303 85.5
arahy.Tifrunner.gnm1.ann1.UTGK89 Arachis hypogaea HOM05D005936 ORTHO05D007967 1.6e-134 483.0 308 82.8
CiPaw.04G067400 Carya illinoinensis HOM05D005936 ORTHO05D007967 1.4e-128 463.4 304 80.9
CSS0027176 Camellia sinensis var. sinensis HOM05D005936 ORTHO05D007967 1.8e-128 463.0 304 81.9
CSS0048625 Camellia sinensis var. sinensis HOM05D005936 ORTHO05D007967 1.8e-128 463.0 304 81.9
Duzib084G0661 Durio zibethinus HOM05D005936 ORTHO05D007967 1.8e-128 463.0 304 81.9
Eucgr.A02812 Eucalyptus grandis HOM05D005936 ORTHO05D007967 1.8e-128 463.0 304 82.6
Cfa008280 Carpinus fangiana HOM05D005936 ORTHO05D007967 3.0e-128 462.2 304 80.6
Ca_10793_v3 Cicer arietinum L. HOM05D005936 ORTHO05D007967 8.8e-128 460.7 263 93.2
CANSAT21G0538 Cannabis sativa HOM05D005936 ORTHO05D007967 1.5e-127 459.9 304 80.6
QL09p014981 Quercus lobata HOM05D005936 ORTHO05D007967 1.5e-127 459.9 303 80.9
Thecc.03G170800 Theobroma cacao HOM05D005936 ORTHO05D007967 2.0e-127 459.5 304 79.9
vmacro06722 Vaccinium macrocarpon HOM05D005936 ORTHO05D007967 3.3e-127 458.8 304 78.6
Hma1.2p1_0270F.1_g108440 Hydrangea macrophylla HOM05D005936 ORTHO05D007967 1.3e-126 456.8 304 80.3
PGR042G3346 Punica granatum HOM05D005936 ORTHO05D007967 1.3e-126 456.8 306 81.7
Potri.015G135400 Populus trichocarpa HOM05D005936 ORTHO05D007967 1.7e-126 456.4 304 80.6
Gohir.D09G040700 Gossypium hirsutum HOM05D005936 ORTHO05D007967 2.2e-126 456.1 304 81.2
Gorai.006G046600 Gossypium raimondii HOM05D005936 ORTHO05D007967 2.2e-126 456.1 304 81.2
Prupe.2G290400 Prunus persica HOM05D005936 ORTHO05D007967 2.8e-126 455.7 301 80.1
Nitab4.5_0005024g0030 Nicotiana tabacum HOM05D005936 ORTHO05D007967 8.2e-126 454.1 306 78.1
Gohir.A09G039900 Gossypium hirsutum HOM05D005936 ORTHO05D007967 1.8e-125 453.0 304 80.6
GSVIVG01010618001 Vitis vinifera HOM05D005936 ORTHO05D007967 1.8e-125 453.0 305 81.0
SalBow1G7635 Salvia bowleyana HOM05D005936 ORTHO05D007967 2.4e-125 452.6 303 80.2
TAR374G0336 Trochodendron aralioides HOM05D005936 ORTHO05D007967 2.4e-125 452.6 304 78.9
arahy.Tifrunner.gnm1.ann1.AYWY8E Arachis hypogaea HOM05D005936 ORTHO05D007967 3.1e-125 452.2 329 76.3
CsaV3_3G016820 Cucumis sativus L. HOM05D005936 ORTHO05D007967 3.1e-125 452.2 304 79.9
MD07G1264500 Malus domestica HOM05D005936 ORTHO05D007967 3.1e-125 452.2 308 78.9
Actinidia34080 Actinidia chinensis HOM05D005936 ORTHO05D007967 4.1e-125 451.8 304 80.6
Nn1g01364 Nelumbo nucifera HOM05D005936 ORTHO05D007967 9.1e-125 450.7 304 77.6
Oeu021758.1 Olea europaea HOM05D005936 ORTHO05D007967 9.1e-125 450.7 304 78.9
Rhsim03G0177300 Rhododendron simsii HOM05D005936 ORTHO05D007967 1.5e-124 449.9 312 78.2
ClCG05G007820 Citrullus lanatus HOM05D005936 ORTHO05D007967 2.6e-124 449.1 304 78.9
FvH4_7g29020 Fragaria vesca HOM05D005936 ORTHO05D007967 7.7e-124 447.6 304 79.6
FAN06G1408 Fragaria x ananassa HOM05D005936 ORTHO05D007967 7.7e-124 447.6 304 79.6
CANSAT21G1747 Cannabis sativa HOM05D005936 ORTHO05D007967 1.0e-123 447.2 304 79.3
Nitab4.5_0001083g0080 Nicotiana tabacum HOM05D005936 ORTHO05D007967 2.2e-123 446.0 308 77.6
DCAR_018171 Daucus carota HOM05D005936 ORTHO05D007967 2.9e-123 445.7 304 78.6
FAN06G0122 Fragaria x ananassa HOM05D005936 ORTHO05D007967 3.8e-123 445.3 304 79.3
PSO478G3778 Papaver somniferum HOM05D005936 ORTHO05D007967 5.0e-123 444.9 305 78.7
FAN03G0200 Fragaria x ananassa HOM05D005936 ORTHO05D007967 8.5e-123 444.1 304 78.6
FAN03G0500 Fragaria x ananassa HOM05D005936 ORTHO05D007967 1.4e-122 443.4 304 78.3
Peaxi162Scf00915g00243 Petunia axillaris HOM05D005936 ORTHO05D007967 4.2e-122 441.8 304 77.0
AUR62021235 Chenopodium quinoa HOM05D005936 ORTHO05D007967 2.1e-121 439.5 305 77.4
Ah.13g068310 Amaranthus hybridus HOM05D005936 ORTHO05D007967 7.9e-121 437.6 307 77.5
Psat6g200960 Pisum sativum HOM05D005936 ORTHO05D007967 3.9e-120 435.3 240 94.6
THA.LOC104811994 Tarenaya hassleriana HOM05D005936 ORTHO05D007967 3.9e-120 435.3 303 76.6
Aqoxy7G00442 Aquilegia oxysepala HOM05D005936 ORTHO05D007967 5.2e-120 434.9 304 77.0
PGSC0003DMG400014268 Solanum tuberosum HOM05D005936 ORTHO05D007967 2.0e-119 433.0 304 75.7
RcHm_v2.0_Chr1g0376731 Rosa chinensis HOM05D005936 ORTHO05D007967 2.6e-119 432.6 306 77.1
AUR62016030 Chenopodium quinoa HOM05D005936 ORTHO05D007967 3.3e-119 432.2 313 75.4
Cc00_g24160 Coffea canephora HOM05D005936 ORTHO05D007967 7.4e-119 431.0 305 76.7
ATR0757G004 Amborella trichopoda HOM05D005936 ORTHO05D007967 9.7e-119 430.6 289 77.2
HanXRQChr13g0405681 Helianthus annuus HOM05D005936 ORTHO05D007967 1.3e-118 430.3 305 77.0
Lsat_1_v5_gn_8_7461 Lactuca sativa HOM05D005936 ORTHO05D007967 1.3e-118 430.3 305 77.7
Solyc03g026210.4 Solanum lycopersicum HOM05D005936 ORTHO05D007967 2.8e-118 429.1 304 75.7
Sabra15G0147400 Salix brachista HOM05D005936 ORTHO05D007967 4.8e-118 428.3 299 77.9
BraA03t10875Z Brassica rapa HOM05D005936 ORTHO05D007967 6.3e-118 427.9 305 75.4
BcaC01g06163 Brassica carinata HOM05D005936 ORTHO05D007967 8.2e-118 427.6 305 75.4
BolC3t14249H Brassica oleracea HOM05D005936 ORTHO05D007967 8.2e-118 427.6 305 75.4
Migut.F00375 Erythranthe guttata HOM05D005936 ORTHO05D007967 1.1e-117 427.2 306 75.8
BcaB01g04183 Brassica carinata HOM05D005936 ORTHO05D007967 1.4e-117 426.8 305 75.1
Ciclev10005510m.g Citrus clementina HOM05D005936 ORTHO05D007967 1.4e-117 426.8 293 77.5
PSO782G1152 Papaver somniferum HOM05D005936 ORTHO05D007967 1.8e-117 426.4 295 78.0
COL.COLO4_14264 Corchorus olitorius HOM05D005936 ORTHO05D007967 5.3e-117 424.9 304 77.6
ECA233G0165 Erigeron canadensis HOM05D005936 ORTHO05D007967 5.3e-117 424.9 272 82.4
Sp6g14350 Schrenkiella parvula HOM05D005936 ORTHO05D007967 5.3e-117 424.9 304 74.3
SpUn0060_0040 Schrenkiella parvula HOM05D005936 ORTHO05D007967 5.3e-117 424.9 304 74.3
Aa31LG3G8470 Aethionema arabicum HOM05D005936 ORTHO05D007967 7.0e-117 424.5 310 74.8
AT5G52100 Arabidopsis thaliana HOM05D005936 ORTHO05D007967 7.0e-117 424.5 305 75.4
Carub.0008s1218 Capsella rubella HOM05D005936 ORTHO05D007967 7.7e-116 421.0 304 73.7
Hma1.2p1_0010F.1_g006890 Hydrangea macrophylla HOM05D005936 ORTHO05D007967 1.7e-115 419.9 262 84.0
AL8G26470 Arabidopsis lyrata HOM05D005936 ORTHO05D007967 2.2e-115 419.5 305 74.8
A03p15850 Brassica napus HOM05D005936 ORTHO05D007967 6.7e-112 407.9 294 74.5
EL10Ac3g05696 Beta vulgaris HOM05D005936 ORTHO05D007967 3.3e-111 405.6 305 73.4
Dinv28478 Davidia involucrata HOM05D005936 ORTHO05D007967 2.8e-110 402.5 265 81.5
Os03g0118600 Oryza sativa ssp. japonica HOM05D005936 ORTHO05D007967 7.0e-109 397.9 279 73.5
MBI12_g29760_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 1.0e-107 394.0 303 70.6
C03p18520 Brassica napus HOM05D005936 ORTHO05D007967 1.3e-107 393.7 319 68.7
MELO3C006876.2 Cucumis melo HOM05D005936 ORTHO05D007967 1.2e-105 387.1 265 78.9
Manes.06G143900 Manihot esculenta HOM05D005936 ORTHO05D007967 6.1e-105 384.8 297 71.7
Lj1C993G3 Lonicera japonica HOM05D005936 ORTHO05D007967 5.2e-104 381.7 306 70.3
TWI23G0201 Tripterygium wilfordii HOM05D005936 ORTHO05D007967 1.5e-103 380.2 295 71.9
Haze_13754 Corylus avellana HOM05D005936 ORTHO05D007967 1.1e-101 374.0 272 75.0
CDE09G1316 Ceratophyllum demersum HOM05D005936 ORTHO05D007967 3.8e-99 365.5 241 78.4
unitig_0.g2488 Utricularia gibba HOM05D005936 ORTHO05D007967 1.9e-98 363.2 264 73.1
Sed0016287 Sechium edule HOM05D005936 ORTHO05D007967 3.0e-96 355.9 220 85.0
SEGI_11434 Sequoiadendron giganteum HOM05D005936 ORTHO05D007967 5.9e-92 341.7 286 60.5
Glyma.20G155600 Glycine max HOM05D005936 ORTHO05D007967 1.7e-91 340.1 219 82.6
TAR375G0526 Trochodendron aralioides HOM05D005936 ORTHO05D007967 1.2e-87 327.4 263 70.3
Pp3c21_9920 Physcomitrium patens HOM05D005936 ORTHO05D007967 5.7e-87 325.1 265 61.1
Actinidia32894 Actinidia chinensis HOM05D005936 ORTHO05D007967 5.4e-85 318.5 242 75.2
Thhalv10014460m.g Eutrema salsugineum HOM05D005936 ORTHO05D007967 1.2e-81 307.4 229 72.9
Mapoly0001s0282 Marchantia polymorpha HOM05D005936 ORTHO05D007967 2.1e-81 306.6 268 60.4
SMO367G1305 Selaginella moellendorffii HOM05D005936 ORTHO05D007967 6.2e-81 305.1 265 58.5
vmacro06720 Vaccinium macrocarpon HOM05D005936 ORTHO05D007967 1.2e-79 300.8 265 63.4
MD01G1197100 Malus domestica HOM05D005936 ORTHO05D007967 6.6e-75 285.0 326 54.0
Hund04704 Selenicereus undatus HOM05D005936 ORTHO05D007967 2.8e-73 279.6 250 63.6
Zm00001eb001140 Zea mays HOM05D005936 ORTHO05D007967 1.3e-70 270.8 190 75.3
CBR_g30244 Chara braunii HOM05D005936 ORTHO05D007967 2.2e-70 270.0 290 49.3
MD01G1197000 Malus domestica HOM05D005936 ORTHO05D007967 9.9e-63 244.6 309 51.5
MBI12_g45864_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 2.4e-61 240.0 216 62.5
MBI18_g06814_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 3.0e-59 233.0 211 62.1
MBI18_g40469_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 6.6e-59 231.9 187 69.0
MSTRG.8763 Avicennia marina HOM05D005936 ORTHO05D007967 4.9e-54 215.7 160 73.1
AagrBONN_evm.TU.Sc2ySwM_340.388 Anthoceros agrestis HOM05D003851 ORTHO05D005657 6.4e-54 215.3 212 56.6
CAN.G548.3 Capsicum annuum HOM05D005936 ORTHO05D007967 7.1e-53 211.8 159 69.8
Duzib205G1997 Durio zibethinus HOM05D005936 ORTHO05D007967 7.8e-52 208.4 227 58.6
Cpa.g.sc107.7 Carica papaya HOM05D005936 ORTHO05D007967 1.7e-51 207.2 160 73.1
CARHR265020 Cardamine hirsuta HOM05D005936 ORTHO05D007967 1.5e-50 204.1 161 70.8
Sopen03g005080 Solanum pennellii HOM05D005936 ORTHO05D007967 3.6e-49 199.5 159 68.6
Os03g0117000 Oryza sativa ssp. japonica HOM05D005936 ORTHO05D007967 6.9e-48 195.3 200 57.5
MBI09_g40772_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 3.2e-45 186.4 154 66.2
MBI18_g34964_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 6.7e-43 178.7 154 63.0
MBI18_g28463_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 1.6e-41 174.1 155 62.6
Cpa.g.sc107.8 Carica papaya HOM05D005936 ORTHO05D007967 5.3e-40 169.1 126 71.4
MBI08_g23116_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 6.4e-38 162.2 139 64.0
FAN01G1428 Fragaria x ananassa HOM05D005936 ORTHO05D007967 1.4e-37 161.0 214 50.5
MBI07_g12175_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 4.5e-31 139.4 158 52.5
MBI15_g15729_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 2.0e-15 87.4 83 56.6
RcHm_v2.0_Chr1g0376771 Rosa chinensis HOM05D005936 ORTHO05D342530 1.0e-11 75.1 133 40.6
MBI16_g19597_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 2.8e-09 67.0 86 47.7
VMungo1127G1192 Vigna mungo HOM05D005936 ORTHO05D000671 2.0e-07 60.8 124 36.3
Medtr2g021790 Medicago truncatula HOM05D005936 ORTHO05D259865 1.7e-06 57.8 68 52.9
VMungo0464G0141 Vigna mungo HOM05D005936 ORTHO05D437478 2.2e-06 57.4 37 73.0


User provided reference genes

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