Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 5.0e-285 983.8 506 100.0
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 5.4e-199 698.0 514 74.1
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 4.0e-194 681.8 514 72.6
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 4.2e-191 671.8 518 70.5
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.2e-169 600.5 522 63.2
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.2e-169 600.5 522 62.5
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 9.4e-167 590.9 522 61.9
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 7.7e-161 571.2 520 61.2
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 2.1e-158 563.1 519 59.9
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.1e-154 549.3 519 61.1
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.2e-152 543.1 532 56.8
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.4e-146 521.9 602 51.0
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 5.6e-135 485.3 529 52.6
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 9.5e-135 484.6 529 52.4
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 1.8e-130 470.3 535 49.7
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.8e-130 470.3 536 50.2
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.6e-129 467.2 557 48.7
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 4.6e-129 465.7 537 48.8
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 5.9e-129 465.3 536 49.4
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 3.9e-128 462.6 527 50.3
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 5.0e-128 462.2 539 50.3
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 8.6e-128 461.5 540 49.4
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.1e-127 461.1 539 49.9
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 7.3e-127 458.4 555 47.0
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 7.3e-127 458.4 531 49.2
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.6e-126 456.1 533 49.3
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.2e-126 455.3 533 49.5
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.0e-125 454.5 539 47.7
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.8e-125 453.8 533 49.0
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 5.2e-125 452.2 543 48.4
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.9e-123 446.4 527 48.2
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 3.7e-123 446.0 522 48.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.2e-121 441.0 520 47.9
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 4.6e-121 439.1 525 47.8
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 3.7e-115 419.5 529 45.4
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 6.4e-115 418.7 534 46.3
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 5.4e-114 415.6 535 46.4
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 7.1e-114 415.2 517 47.0
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.0e-112 411.4 522 46.2
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.3e-112 410.2 568 44.0
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 3.0e-112 409.8 533 43.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 6.6e-112 408.7 538 45.9
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.9e-111 407.1 533 43.5
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 7.3e-111 405.2 543 44.2
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 2.1e-110 403.7 528 43.0
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 6.2e-110 402.1 533 45.2
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.1e-109 401.4 548 43.6
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.8e-109 398.7 551 43.6
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 6.8e-109 398.7 539 45.3
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 6.8e-109 398.7 551 43.9
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-108 397.9 547 43.7
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.4e-108 396.4 547 43.5
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.4e-108 396.0 549 43.4
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.8e-108 395.6 547 43.5
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 5.8e-108 395.6 536 43.1
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 2.9e-107 393.3 532 42.7
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 3.7e-107 392.9 534 42.5
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.4e-106 391.0 533 43.7
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.9e-106 390.6 563 43.0
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.2e-106 389.8 532 42.7
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.5e-105 386.3 535 44.1
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 3.5e-105 386.3 556 43.2
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 4.6e-105 386.0 534 42.3
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.3e-104 384.4 530 41.7
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.7e-104 384.0 532 42.3
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.7e-104 384.0 530 40.9
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 3.9e-104 382.9 507 46.2
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.1e-102 377.1 530 40.6
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.1e-102 377.1 530 40.6
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 2.8e-102 376.7 530 40.6
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 2.8e-102 376.7 541 42.5
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 3.6e-102 376.3 532 41.5
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 4.7e-102 375.9 538 42.9
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 6.2e-102 375.6 538 41.4
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 1.4e-101 374.4 537 42.5
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 8.9e-101 371.7 537 42.6
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 1.2e-100 371.3 531 43.7
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 5.8e-100 369.0 539 42.3
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.3e-99 367.9 534 41.6
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 3.8e-99 366.3 531 43.3
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 8.4e-99 365.2 532 41.2
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 8.4e-99 365.2 534 41.6
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 3.2e-98 363.2 535 43.7
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 7.1e-98 362.1 538 42.8
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 9.3e-98 361.7 532 39.8
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 6.0e-97 359.0 530 39.2
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.3e-96 357.8 530 39.2
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.7e-96 357.5 449 47.2
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 2.3e-96 357.1 548 40.7
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 3.0e-96 356.7 529 42.3
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 4.3e-95 352.8 473 43.1
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.6e-94 350.9 553 41.2
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.6e-92 343.6 530 39.4
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 3.4e-92 343.2 428 46.0
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 2.2e-91 340.5 528 38.1
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 6.4e-91 339.0 537 40.2
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 2.4e-90 337.0 394 50.8
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.1e-87 328.2 524 40.3
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 3.3e-87 326.6 700 34.4
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.3e-86 324.7 417 45.1
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.8e-86 323.6 529 40.5
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.6e-86 323.2 533 38.6
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.8e-85 320.9 510 40.0
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.4e-85 320.5 529 38.4
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 9.0e-85 318.5 537 38.7
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 7.6e-84 315.5 515 39.8
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 7.6e-84 315.5 539 37.8
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 9.9e-84 315.1 532 38.9
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 5.8e-76 289.3 557 34.3
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.5e-75 285.8 343 49.9
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 9.3e-74 282.0 387 42.9
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 5.1e-72 276.2 561 33.7
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 5.1e-72 276.2 385 42.1
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.5e-71 274.6 540 36.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 4.3e-71 273.1 564 32.8
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.8e-70 270.4 532 34.6
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 2.1e-65 254.2 277 50.5
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.3e-64 251.5 279 50.5
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.9e-64 250.0 462 37.2
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 6.7e-64 249.2 534 33.7
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.1e-61 241.9 338 43.2
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 1.3e-54 218.4 261 47.1
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 5.9e-52 209.5 437 32.7
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.4e-48 198.4 483 32.1
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 7.4e-47 192.6 262 44.7
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 3.1e-45 187.2 221 47.1
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 1.0e-43 182.2 153 59.5
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 6.1e-41 172.9 444 31.1
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 9.7e-39 165.6 148 58.8
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 6.5e-35 152.9 263 34.6
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 2.5e-34 151.0 351 35.3
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.0e-32 143.7 152 48.7
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.2e-30 137.9 164 45.7
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 2.0e-28 131.3 159 42.1
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 4.5e-28 130.2 159 42.8
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 7.7e-28 129.4 206 35.9
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.0e-27 129.0 518 23.9
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.2e-26 123.6 341 32.0
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 5.5e-26 123.2 154 41.6
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 3.4e-23 114.0 138 47.8
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 2.8e-22 110.9 660 22.4
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.0e-20 104.8 181 33.7
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 6.6e-19 99.8 188 33.5
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 7.3e-18 96.3 242 29.3
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.1e-13 82.4 138 37.7
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.3e-11 74.7 266 27.1
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.6e-09 68.6 147 29.9
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 2.8e-09 67.8 89 46.1
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 2.6e-07 61.2 96 34.4
arahy.Tifrunner.gnm1.ann1.674JY7 Arachis hypogaea HOM05D004671 ORTHO05D038832 3.4e-07 60.8 80 45.0


User provided reference genes

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