Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.9e-139 499.2 260 100.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.1e-114 416.0 228 95.2
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 4.6e-109 398.3 228 89.0
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.3e-107 392.1 228 87.7
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.4e-102 375.9 228 82.5
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.1e-99 367.1 228 80.3
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.9e-99 366.3 227 79.3
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 6.9e-97 357.8 228 78.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.3e-95 353.6 223 78.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 4.0e-89 332.0 213 77.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 4.5e-88 328.6 228 70.2
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.8e-88 328.2 230 73.5
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.9e-86 323.2 228 70.6
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 2.1e-85 319.7 228 69.7
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.9e-83 313.2 229 68.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 8.2e-82 307.8 228 66.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 8.2e-82 307.8 228 65.4
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.1e-81 307.4 228 64.9
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.6e-80 302.8 227 66.5
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.9e-79 298.5 229 65.1
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.2e-78 295.4 228 62.3
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.2e-77 293.9 218 67.4
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.2e-77 293.9 230 66.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.2e-77 293.9 229 65.5
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.2e-77 293.9 229 62.9
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.1e-77 293.1 229 64.6
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 7.9e-77 291.2 240 61.7
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.8e-76 290.0 229 64.6
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.0e-76 289.3 229 64.2
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.0e-76 289.3 228 67.5
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 3.9e-76 288.9 229 62.0
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 5.1e-76 288.5 227 61.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.1e-76 288.5 229 62.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.3e-75 285.8 200 70.5
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.1e-74 283.1 228 61.8
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 6.3e-74 281.6 229 63.3
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.1e-73 280.8 229 61.6
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.4e-73 280.4 227 62.1
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.4e-73 280.4 154 87.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.8e-73 280.0 227 62.1
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.4e-73 279.6 229 61.6
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.4e-73 279.6 228 61.0
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 5.3e-73 278.5 229 61.6
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.2e-72 277.3 190 70.0
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 2.0e-72 276.6 228 60.5
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.4e-72 275.8 230 60.4
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 7.6e-72 274.6 229 61.1
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.0e-71 274.2 229 60.3
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 8.5e-71 271.2 226 61.5
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-70 270.8 241 58.1
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.4e-70 270.4 227 60.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 4.2e-70 268.9 226 61.1
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.2e-70 268.9 227 60.4
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.5e-70 268.5 226 61.1
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-69 267.3 241 57.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.7e-69 266.2 227 57.7
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 7.9e-69 264.6 228 58.3
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 7.9e-69 264.6 229 61.1
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 7.9e-69 264.6 227 57.3
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.3e-68 263.1 226 59.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 5.1e-68 261.9 227 56.8
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.5e-67 260.4 223 60.5
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.9e-67 260.0 223 60.5
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 9.7e-67 257.7 223 60.5
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 9.7e-67 257.7 227 58.6
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 9.7e-67 257.7 227 59.0
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.3e-66 257.3 227 58.6
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.2e-66 256.5 223 60.1
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 4.8e-66 255.4 230 61.3
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.8e-66 255.4 235 57.9
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 6.9e-65 251.5 231 57.1
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.5e-64 250.4 227 57.3
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.5e-64 250.4 227 57.3
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.5e-64 250.4 185 70.3
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 2.6e-64 249.6 223 57.8
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.7e-63 246.9 227 57.7
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 8.5e-63 244.6 223 57.0
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 8.5e-63 244.6 235 54.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.4e-62 243.8 223 56.5
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.4e-62 243.8 228 58.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.5e-62 243.0 223 56.5
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.5e-62 243.0 223 56.1
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.2e-62 242.7 244 54.5
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.2e-62 242.7 227 54.6
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 6.1e-61 238.4 230 55.7
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.0e-60 237.7 227 54.6
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.4e-60 237.3 452 37.4
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.3e-60 236.5 228 57.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.5e-59 233.8 235 55.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 7.4e-59 231.5 233 52.8
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 3.7e-58 229.2 212 58.0
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 3.7e-58 229.2 215 56.7
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 4.5e-56 222.2 144 71.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 4.5e-56 222.2 153 71.2
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.2e-53 214.2 231 51.5
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.4e-52 210.7 228 49.1
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.5e-51 207.2 186 58.6
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.0e-51 206.8 238 46.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.8e-49 200.3 232 47.4
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 7.7e-48 194.9 241 45.2
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 1.0e-47 194.5 242 45.5
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 6.5e-47 191.8 154 60.4
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 4.7e-45 185.7 253 45.8
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 3.0e-44 183.0 142 62.0
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.0e-43 180.3 228 44.7
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.3e-42 177.6 229 46.3
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.1e-37 160.2 151 55.0
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.7e-37 159.8 228 43.4
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.6e-37 159.5 266 37.6
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 7.7e-32 141.7 158 48.7
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 7.7e-32 141.7 242 41.7
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.2e-27 127.9 78 73.1
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 2.0e-27 127.1 79 73.4
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.7e-26 122.9 77 71.4
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.1e-25 119.4 78 74.4
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.0e-24 117.1 78 67.9
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.5e-24 116.3 119 59.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.4e-19 99.4 76 61.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.9e-18 95.9 213 32.9
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 9.2e-17 91.7 125 39.2
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.1e-12 78.2 303 27.4
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.2e-11 74.7 76 51.3
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.5e-11 74.3 109 40.4
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 4.9e-10 69.3 261 28.7
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-06 57.8 35 68.6


User provided reference genes

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