Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 2.3e-31 138.3 69 100.0
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 2.6e-27 124.8 65 92.3
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 4.6e-24 114.0 64 85.9
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 6.9e-20 100.1 60 81.7
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 1.5e-19 99.0 60 80.0
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 2.2e-18 95.1 67 70.1
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 2.9e-18 94.7 55 83.6
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 3.8e-18 94.4 62 74.2
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 8.4e-18 93.2 67 68.7
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 8.4e-18 93.2 56 80.4
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 3.2e-17 91.3 57 77.2
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 5.4e-17 90.5 57 78.9
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 7.1e-17 90.1 58 74.1
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.2e-16 89.4 60 76.7
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 6.0e-16 87.0 55 78.2
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 6.0e-16 87.0 57 71.9
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 7.8e-16 86.7 52 78.8
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 1.0e-15 86.3 63 68.3
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.7e-15 85.5 52 75.0
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.7e-15 85.5 52 75.0
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 1.7e-15 85.5 60 68.3
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 3.0e-15 84.7 64 65.6
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 3.9e-15 84.3 55 76.4
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 1.5e-14 82.4 53 75.5
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.5e-14 82.4 52 75.0
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 1.5e-14 82.4 60 71.7
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.9e-14 82.0 57 70.2
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 2.5e-14 81.6 57 70.2
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 3.3e-14 81.3 60 66.7
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 4.3e-14 80.9 54 74.1
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 5.6e-14 80.5 54 74.1
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 1.3e-13 79.3 51 74.5
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 2.8e-13 78.2 63 66.7
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 6.2e-13 77.0 50 70.0
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 6.2e-13 77.0 53 69.8
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 6.2e-13 77.0 53 69.8
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 6.2e-13 77.0 54 70.4
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 1.1e-12 76.3 54 70.4
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 1.1e-12 76.3 50 74.0
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 1.1e-12 76.3 58 65.5
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 2.4e-12 75.1 54 68.5
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 3.1e-12 74.7 53 66.0
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 4.0e-12 74.3 57 64.9
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 4.0e-12 74.3 63 65.1
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 2.0e-11 72.0 64 59.4
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 2.0e-11 72.0 64 59.4
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 3.4e-11 71.2 54 64.8
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 3.4e-11 71.2 54 66.7
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 4.5e-11 70.9 56 62.5
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 4.5e-11 70.9 47 68.1
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 4.5e-11 70.9 54 64.8
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 5.8e-11 70.5 52 67.3
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 5.8e-11 70.5 59 59.3
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 1.3e-10 69.3 50 62.0
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 1.3e-10 69.3 50 60.0
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 1.3e-10 69.3 72 54.2
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 3.8e-10 67.8 46 73.9
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 1.1e-09 66.2 39 76.9
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 4.2e-09 64.3 62 58.1
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 1.2e-08 62.8 46 63.0
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 1.0e-07 59.7 43 67.4
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 1.3e-07 59.3 44 63.6
Ah.05g180620 Amaranthus hybridus HOM05D011433 ORTHO05D013366 7.4e-06 53.5 53 49.1


User provided reference genes

Program Settings