Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 1.3e-100 369.8 188 100.0
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 6.5e-81 304.3 187 80.2
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.4e-78 296.6 184 80.4
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 2.0e-66 256.1 177 74.0
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 4.5e-66 255.0 175 70.9
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 1.7e-65 253.1 172 73.3
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 1.7e-65 253.1 175 71.4
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.3e-65 252.7 174 71.3
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 2.3e-65 252.7 175 70.9
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 6.8e-62 241.1 187 63.6
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 1.2e-61 240.4 188 65.4
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 1.3e-60 236.9 176 67.0
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 3.7e-60 235.3 176 65.9
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 6.3e-60 234.6 176 65.3
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 6.3e-60 234.6 178 64.0
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.1e-59 233.8 179 64.2
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.8e-59 233.0 175 65.7
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.8e-59 233.0 175 66.9
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 4.1e-59 231.9 175 64.6
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 9.2e-59 230.7 177 65.0
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.6e-58 229.9 175 66.3
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.6e-58 229.9 177 63.3
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 2.7e-58 229.2 184 63.0
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 3.5e-58 228.8 175 65.7
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 5.9e-58 228.0 175 64.0
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 7.8e-58 227.6 175 62.9
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 1.0e-57 227.3 175 64.0
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 1.7e-57 226.5 175 65.1
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.7e-57 226.5 175 65.1
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 5.0e-57 224.9 175 63.4
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 8.6e-57 224.2 175 65.7
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 8.6e-57 224.2 175 62.9
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.9e-56 223.0 172 64.0
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.9e-56 223.0 175 61.1
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 2.5e-56 222.6 175 62.3
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 2.5e-56 222.6 168 66.1
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 3.3e-56 222.2 175 63.4
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 5.6e-56 221.5 171 63.2
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 5.6e-56 221.5 176 63.6
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.1e-55 219.5 175 61.1
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 4.7e-55 218.4 175 63.4
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 6.1e-55 218.0 177 61.6
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.0e-54 217.2 169 64.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 3.0e-54 215.7 167 64.7
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.0e-54 215.7 176 59.1
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 3.0e-54 215.7 176 59.1
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 4.0e-54 215.3 165 63.6
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 5.2e-54 214.9 167 65.3
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 2.6e-53 212.6 176 61.9
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 3.4e-53 212.2 171 62.6
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.4e-53 212.2 184 57.6
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 7.5e-53 211.1 172 62.2
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.3e-52 210.3 179 60.9
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 3.7e-52 208.8 173 59.0
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 8.3e-52 207.6 175 57.7
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 8.3e-52 207.6 184 58.2
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 8.3e-52 207.6 180 57.8
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.8e-51 206.5 173 59.0
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 5.4e-51 204.9 180 56.1
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 9.2e-51 204.1 180 57.8
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 9.2e-51 204.1 176 58.0
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 1.6e-50 203.4 180 55.0
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 2.0e-50 203.0 171 57.9
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 2.7e-50 202.6 172 59.9
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.3e-49 199.5 161 60.2
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.0e-49 199.1 161 60.2
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.0e-49 199.1 161 60.2
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.9e-49 198.7 161 60.2
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 6.6e-49 198.0 173 56.1
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 6.6e-49 198.0 173 56.6
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-48 197.2 161 59.6
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-48 197.2 161 59.6
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 3.3e-48 195.7 172 59.3
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 8.9e-46 187.6 177 53.7
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 2.3e-41 172.9 148 60.1
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.5e-40 169.5 178 49.4
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 8.9e-38 161.0 171 43.9
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 3.5e-34 149.1 135 59.3
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 7.8e-34 147.9 132 57.6
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 1.3e-33 147.1 135 59.3
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.3e-33 147.1 129 58.9
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.6e-31 140.2 139 52.5
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 2.1e-31 139.8 170 42.4
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 3.4e-29 132.5 132 53.0
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 2.4e-27 126.3 92 63.0
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 1.7e-25 120.2 114 59.6
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 2.0e-21 106.7 59 81.4
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 4.9e-20 102.1 172 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.4e-19 100.5 176 33.5
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-19 100.5 85 58.8
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 1.6e-18 97.1 83 51.8
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 4.3e-16 89.0 50 70.0
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 6.2e-15 85.1 56 66.1
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 4.0e-14 82.4 56 67.9
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-10 70.1 53 62.3
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 3.9e-09 65.9 41 73.2
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 2.8e-07 59.7 168 24.4


User provided reference genes

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