Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 1.8e-37 158.7 77 100.0
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 3.0e-24 114.8 77 77.9
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 6.3e-22 107.1 78 67.9
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 1.1e-21 106.3 78 66.7
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 7.6e-20 100.1 79 65.8
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 2.9e-19 98.2 78 60.3
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 4.6e-17 90.9 75 54.7
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 5.1e-16 87.4 75 56.0
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 5.1e-16 87.4 77 55.8
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 2.8e-14 81.6 91 50.5
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.8e-14 81.6 75 50.7
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 3.7e-14 81.3 68 58.8
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 3.1e-13 78.2 76 47.4
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 3.1e-13 78.2 80 56.2
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.9e-13 77.0 71 54.9
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 4.5e-12 74.3 66 57.6
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.5e-12 74.3 79 50.6
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.3e-11 72.8 79 57.0
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.7e-11 72.4 67 56.7
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.7e-11 72.4 73 54.8
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.7e-11 72.4 65 50.8
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.9e-11 71.6 68 54.4
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 5.0e-11 70.9 77 51.9
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 6.5e-11 70.5 82 47.6
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 6.5e-11 70.5 78 51.3
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.5e-11 70.5 79 53.2
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 8.5e-11 70.1 52 59.6
Medtr6g034805 Medicago truncatula HOM05D004540 ORTHO05D004852 1.9e-10 68.9 77 46.8
Lj2g0012443 Lotus japonicus HOM05D004540 ORTHO05D004852 3.2e-10 68.2 62 53.2
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 7.2e-10 67.0 63 55.6
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.2e-09 66.2 63 52.4
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.6e-09 65.9 63 50.8
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 2.1e-09 65.5 60 51.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.7e-09 65.1 59 52.5
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 3.6e-09 64.7 71 49.3
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 4.6e-09 64.3 70 52.9
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 6.1e-09 63.9 66 50.0
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.0e-08 63.2 75 52.0
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.4e-08 62.8 72 48.6
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.4e-08 62.8 66 54.5
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.4e-08 62.8 70 45.7
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 1.4e-08 62.8 82 46.3
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.3e-08 62.0 64 48.4
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.9e-08 61.2 61 49.2
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 3.9e-08 61.2 62 53.2
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 3.9e-08 61.2 70 48.6
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 6.7e-08 60.5 63 42.9
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 8.8e-08 60.1 71 47.9
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 8.8e-08 60.1 65 47.7
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 8.8e-08 60.1 64 50.0
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.5e-07 59.3 66 45.5
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-07 59.3 70 45.7
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-07 59.3 70 45.7
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.5e-07 59.3 70 45.7
Cpa.g.sc49.40 Carica papaya HOM05D004540 ORTHO05D004852 2.0e-07 58.9 65 49.2
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.0e-07 58.9 64 43.8
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 3.3e-07 58.2 69 43.5
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 7.4e-07 57.0 62 46.8
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 7.4e-07 57.0 74 43.2
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.4e-07 57.0 74 43.2
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.4e-07 57.0 74 43.2
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.4e-07 57.0 74 43.2
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.4e-07 57.0 64 42.2
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.4e-07 57.0 64 42.2
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.4e-07 57.0 64 42.2
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 7.4e-07 57.0 62 50.0
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.3e-06 56.2 70 38.6
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.7e-06 55.8 64 40.6
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 2.2e-06 55.5 69 47.8
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.2e-06 55.5 66 47.0
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 2.8e-06 55.1 69 47.8
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 2.8e-06 55.1 69 47.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.7e-06 54.7 65 43.1
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 4.8e-06 54.3 59 47.5
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 4.8e-06 54.3 74 40.5
CSS0005521 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 8.2e-06 53.5 60 45.0


User provided reference genes

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