Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 9.6e-113 410.2 215 100.0
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 4.2e-92 341.7 215 82.8
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.4e-82 310.1 214 79.4
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 3.2e-76 288.9 216 73.6
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.7e-72 276.6 222 70.7
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 4.8e-72 275.0 222 70.3
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.6e-70 270.0 214 70.6
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 3.5e-70 268.9 216 69.9
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 8.5e-69 264.2 222 67.6
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 9.4e-68 260.8 215 67.4
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 7.3e-52 208.0 167 70.7
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.6e-51 206.8 140 79.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 6.8e-42 174.9 205 53.2
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 4.4e-41 172.2 159 60.4
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 9.8e-41 171.0 159 59.1
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.3e-40 170.6 188 54.8
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.1e-39 167.5 196 52.6
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.9e-39 166.8 147 63.3
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 2.4e-39 166.4 201 52.2
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 7.1e-39 164.9 166 56.0
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 9.2e-39 164.5 164 57.9
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 5.1e-37 158.7 147 59.9
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 8.6e-37 157.9 264 40.5
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.5e-36 157.1 190 50.5
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 2.5e-36 156.4 192 50.5
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 9.5e-36 154.5 174 55.2
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 9.5e-36 154.5 147 55.8
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.2e-35 154.1 164 50.6
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.2e-35 154.1 147 58.5
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 2.1e-35 153.3 281 38.4
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 2.1e-35 153.3 163 55.8
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.1e-35 153.3 205 48.3
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 2.8e-35 152.9 194 49.5
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 3.6e-35 152.5 154 58.4
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 4.7e-35 152.1 191 47.6
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 8.1e-35 151.4 181 49.2
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 1.1e-34 151.0 194 47.9
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.1e-34 151.0 174 50.6
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.1e-34 151.0 185 48.6
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.1e-34 151.0 168 51.8
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.4e-34 150.6 163 54.0
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.8e-34 150.2 185 50.8
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 3.1e-34 149.4 182 50.5
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 4.0e-34 149.1 185 47.6
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 4.0e-34 149.1 203 49.8
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.0e-34 149.1 149 53.7
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 6.8e-34 148.3 179 49.7
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.2e-33 147.5 184 50.5
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.2e-33 147.5 182 50.5
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.2e-33 147.5 186 47.3
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.5e-33 147.1 175 50.9
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 1.5e-33 147.1 181 50.3
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.6e-33 146.4 183 50.8
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.6e-33 146.4 182 50.0
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.6e-33 146.4 187 45.5
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.4e-33 146.0 187 46.5
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.4e-33 145.6 187 46.0
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 4.4e-33 145.6 180 47.8
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 5.8e-33 145.2 175 48.0
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 9.9e-33 144.4 181 51.4
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 3.8e-32 142.5 157 51.6
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 3.8e-32 142.5 159 49.7
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 3.8e-32 142.5 173 48.6
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 8.4e-32 141.4 191 47.1
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 8.4e-32 141.4 259 39.0
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.1e-31 141.0 165 50.9
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.1e-31 141.0 187 44.9
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 1.4e-31 140.6 162 51.2
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.4e-31 140.6 191 46.1
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.9e-31 140.2 195 44.1
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.9e-31 140.2 146 52.7
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.4e-31 139.8 191 47.1
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.4e-31 139.8 145 55.2
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 3.2e-31 139.4 158 50.0
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 4.1e-31 139.0 196 45.9
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 5.4e-31 138.7 145 53.1
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 5.4e-31 138.7 166 48.2
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 7.1e-31 138.3 185 47.0
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 9.2e-31 137.9 206 43.7
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 9.2e-31 137.9 186 46.8
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.2e-30 137.5 175 48.0
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.6e-30 137.1 158 50.0
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.6e-30 137.1 180 48.3
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.6e-30 137.1 168 50.6
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 2.1e-30 136.7 187 44.4
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 2.7e-30 136.3 158 49.4
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.0e-29 134.4 155 50.3
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 3.0e-29 132.9 163 46.6
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 5.1e-29 132.1 179 44.7
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 6.6e-29 131.7 134 52.2
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 2.5e-28 129.8 166 47.6
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 9.6e-28 127.9 147 49.7
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.6e-27 125.9 149 48.3
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 4.7e-27 125.6 183 45.9
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.1e-26 124.4 277 36.5
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 8.9e-26 121.3 143 47.6
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.6e-25 119.8 135 48.9
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 2.6e-25 119.8 135 48.9
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 9.9e-25 117.9 186 40.3
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 2.2e-24 116.7 144 47.2
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.9e-23 113.6 175 41.1
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.9e-23 113.6 130 55.4
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 3.2e-23 112.8 164 47.0
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 7.1e-23 111.7 131 54.2
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.2e-22 110.9 191 38.7
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 1.6e-22 110.5 165 44.8
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 6.0e-22 108.6 185 40.5
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 3.0e-21 106.3 147 43.5
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 6.6e-21 105.1 160 42.5
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 8.7e-21 104.8 147 42.9
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.1e-20 104.4 243 32.5
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 1.9e-20 103.6 240 31.7
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 3.3e-20 102.8 186 38.7
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 4.3e-20 102.4 198 32.8
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 7.3e-20 101.7 229 35.4
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 9.6e-20 101.3 169 44.4
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.1e-19 100.1 157 40.8
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.8e-19 99.8 235 30.6
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.4e-18 97.4 219 35.2
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 2.4e-18 96.7 158 41.8
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.9e-15 87.0 115 47.8
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 3.2e-15 86.3 107 45.8
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 9.3e-15 84.7 138 40.6
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.1e-11 73.6 117 42.7
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 2.8e-11 73.2 116 38.8
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.0e-09 67.0 105 45.7
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.3e-08 64.3 189 30.2
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.7e-08 63.9 100 46.0
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.4e-07 60.8 69 50.7
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 7.1e-07 58.5 74 44.6
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.6e-06 57.4 135 32.6


User provided reference genes

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