Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 9.3e-78 294.3 258 100.0
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 4.2e-22 109.4 282 59.9
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 2.3e-20 103.6 89 65.2
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 4.0e-20 102.8 258 56.2
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 8.8e-20 101.7 256 64.5
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 1.8e-17 94.0 218 61.9
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 1.8e-17 94.0 93 63.4
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 3.5e-16 89.7 91 71.4
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 4.5e-16 89.4 89 67.4
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.5e-16 89.4 88 76.1
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 1.7e-15 87.4 94 70.2
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.7e-15 87.4 91 79.1
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 2.9e-15 86.7 88 68.2
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 3.8e-15 86.3 89 52.8
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 8.5e-15 85.1 89 65.2
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 9.4e-14 81.6 94 66.0
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 1.2e-13 81.3 91 69.2
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 1.6e-13 80.9 97 61.9
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 2.7e-13 80.1 90 68.9
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 4.7e-13 79.3 91 54.9
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.7e-13 79.3 91 68.1
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.7e-13 79.3 47 76.6
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.7e-13 79.3 91 68.1
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 6.1e-13 79.0 89 69.7
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.1e-13 79.0 95 63.2
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 6.1e-13 79.0 87 69.0
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 8.0e-13 78.6 87 71.3
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 8.0e-13 78.6 88 71.6
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 1.0e-12 78.2 88 67.0
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 2.3e-12 77.0 88 62.5
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.3e-12 77.0 91 68.1
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 4.0e-12 76.3 47 72.3
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 5.2e-12 75.9 47 72.3
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 5.2e-12 75.9 93 65.6
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 6.8e-12 75.5 93 64.5
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 6.8e-12 75.5 94 58.5
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.2e-11 74.7 95 47.4
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.0e-11 73.9 44 77.3
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.0e-11 73.9 46 71.7
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 2.6e-11 73.6 258 48.8
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.6e-11 73.6 81 59.3
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 5.7e-11 72.4 96 52.1
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.7e-11 72.4 89 60.7
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 5.7e-11 72.4 88 69.3
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 7.5e-11 72.0 91 64.8
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 7.5e-11 72.0 86 62.8
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 9.8e-11 71.6 47 68.1
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 1.3e-10 71.2 82 69.5
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.3e-10 71.2 47 68.1
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 1.7e-10 70.9 90 64.4
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.7e-10 70.9 49 67.3
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.8e-10 70.1 50 64.0
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.8e-10 70.1 89 66.3
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 2.8e-10 70.1 58 62.1
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 3.7e-10 69.7 47 66.0
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 3.7e-10 69.7 49 65.3
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 3.7e-10 69.7 90 47.8
Eucgr.F04219 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.8e-10 69.3 90 64.4
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.3e-10 68.9 75 65.3
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 6.3e-10 68.9 48 66.7
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 8.3e-10 68.6 80 70.0
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 8.3e-10 68.6 49 63.3
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 8.3e-10 68.6 44 75.0
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 8.3e-10 68.6 71 53.5
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 1.1e-09 68.2 55 61.8
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.1e-09 68.2 89 64.0
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-09 68.2 260 43.1
Ciclev10002747m.g Citrus clementina HOM05D002879 ORTHO05D002930 1.8e-09 67.4 93 54.8
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 1.8e-09 67.4 96 53.1
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.8e-09 67.4 87 65.5
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 1.8e-09 67.4 87 65.5
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 2.4e-09 67.0 88 62.5
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.4e-09 67.0 95 61.1
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 2.4e-09 67.0 95 61.1
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 4.1e-09 66.2 89 64.0
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 4.1e-09 66.2 48 64.6
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 5.4e-09 65.9 93 62.4
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 5.4e-09 65.9 86 61.6
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 7.0e-09 65.5 88 52.3
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 7.0e-09 65.5 95 63.2
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 7.0e-09 65.5 90 61.1
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 7.0e-09 65.5 89 65.2
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 7.0e-09 65.5 50 68.0
Sed0017062 Sechium edule HOM05D002879 ORTHO05D002930 9.1e-09 65.1 92 60.9
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.6e-08 64.3 43 65.1
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.6e-08 64.3 44 65.9
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 2.0e-08 63.9 89 59.6
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 2.7e-08 63.5 45 60.0
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.7e-08 63.5 47 61.7
Eucgr.F02697 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.7e-08 63.5 89 59.6
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 2.7e-08 63.5 43 65.1
Sopen04g027610 Solanum pennellii HOM05D002879 ORTHO05D002930 2.7e-08 63.5 88 64.8
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 2.7e-08 63.5 93 44.1
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 4.5e-08 62.8 90 60.0
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 4.5e-08 62.8 97 57.7
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 5.9e-08 62.4 78 57.7
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 7.7e-08 62.0 45 62.2
Ciclev10002749m.g Citrus clementina HOM05D002879 ORTHO05D002930 7.7e-08 62.0 93 59.1
arahy.Tifrunner.gnm1.ann1.HFKS8W Arachis hypogaea HOM05D002879 ORTHO05D002930 1.0e-07 61.6 91 60.4
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.0e-07 61.6 92 60.9
Zm00001eb362480 Zea mays HOM05D002879 ORTHO05D002930 1.0e-07 61.6 50 58.0
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.3e-07 61.2 44 63.6
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.3e-07 61.2 95 57.9
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.3e-07 61.2 44 63.6
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.7e-07 60.8 47 55.3
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.7e-07 60.8 47 59.6
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 2.2e-07 60.5 92 65.2
unitig_747.g21665 Utricularia gibba HOM05D002879 ORTHO05D002930 2.9e-07 60.1 47 57.4
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 3.8e-07 59.7 91 60.4
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 3.8e-07 59.7 89 61.8
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 3.8e-07 59.7 89 61.8
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 3.8e-07 59.7 45 62.2
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 5.0e-07 59.3 43 62.8
Hma1.2p1_0240F.1_g100350 Hydrangea macrophylla HOM05D002879 ORTHO05D002930 8.5e-07 58.5 71 62.0
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 8.5e-07 58.5 87 63.2
arahy.Tifrunner.gnm1.ann1.MR10IA Arachis hypogaea HOM05D002879 ORTHO05D002930 1.1e-06 58.2 91 59.3
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 1.1e-06 58.2 95 49.5
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.1e-06 58.2 43 65.1
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.1e-06 58.2 48 58.3
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 1.1e-06 58.2 97 50.5
Os01g0963600 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.1e-06 58.2 45 55.6
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.5e-06 57.8 75 41.3
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.5e-06 57.8 50 62.0
SMO277G0001 Selaginella moellendorffii HOM05D030254 ORTHO05D002930 1.5e-06 57.8 89 38.2
Zm00001eb083180 Zea mays HOM05D002879 ORTHO05D002930 2.5e-06 57.0 83 45.8
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 3.2e-06 56.6 86 57.0
COL.COLO4_29859 Corchorus olitorius HOM05D002879 ORTHO05D002930 4.2e-06 56.2 92 55.4
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.2e-06 56.2 74 41.9
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.2e-06 56.2 74 41.9
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.2e-06 56.2 81 39.5
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 4.2e-06 56.2 50 56.0
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 4.2e-06 56.2 43 58.1
Psat6g192400 Pisum sativum HOM05D002879 ORTHO05D002930 5.5e-06 55.8 38 68.4
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.4e-06 55.1 87 56.3
AUR62040599 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.4e-06 55.1 92 42.4
Oeu046050.1 Olea europaea HOM05D002879 ORTHO05D002930 9.4e-06 55.1 74 66.2


User provided reference genes

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