Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 6.7e-140 500.7 265 100.0
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 1.5e-115 419.9 239 90.4
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 3.5e-112 408.7 239 87.9
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 4.4e-99 365.2 238 78.6
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 6.3e-98 361.3 239 79.1
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.4e-97 359.4 239 77.4
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.1e-97 359.0 254 74.4
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.6e-93 346.7 252 73.4
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 4.7e-93 345.1 239 75.3
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 8.0e-93 344.4 252 72.6
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 5.7e-91 338.2 239 73.2
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 8.0e-85 317.8 240 70.0
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.4e-84 317.0 236 67.4
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 4.0e-84 315.5 238 67.6
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 6.8e-84 314.7 239 66.5
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.4e-83 312.0 236 66.9
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 9.8e-83 310.8 236 66.5
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.3e-82 310.5 239 69.5
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.4e-82 308.1 247 64.0
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 9.2e-81 304.3 235 64.7
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.2e-80 303.9 235 64.7
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.2e-80 303.9 235 64.7
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.6e-80 303.5 237 65.4
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.6e-80 303.5 235 66.0
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 4.6e-80 302.0 235 65.5
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.7e-79 300.1 242 62.8
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 3.0e-79 299.3 237 64.6
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 5.0e-79 298.5 248 60.9
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 8.6e-79 297.7 240 62.1
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.9e-78 296.6 236 64.0
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 4.3e-78 295.4 234 62.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.6e-78 295.0 239 62.3
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 9.5e-78 294.3 236 64.0
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 2.1e-77 293.1 238 60.9
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.1e-76 290.8 235 63.0
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.4e-76 290.4 239 61.9
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 3.1e-76 289.3 219 68.0
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 4.0e-76 288.9 269 59.1
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.0e-75 286.6 261 57.5
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 9.8e-75 284.3 230 62.6
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 4.9e-74 282.0 205 68.8
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.9e-73 280.0 241 60.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 7.0e-73 278.1 230 61.7
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 9.2e-73 277.7 229 62.4
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 9.2e-73 277.7 232 58.6
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.2e-72 277.3 239 59.8
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.6e-72 276.9 243 59.7
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.1e-72 276.6 243 59.7
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 8.6e-71 271.2 252 56.3
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.6e-69 266.9 230 59.1
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 6.2e-69 265.0 207 64.7
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.3e-68 263.1 234 57.7
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.2e-67 260.8 241 55.2
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.0e-67 260.0 241 55.2
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.0e-67 260.0 241 55.2
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 9.9e-67 257.7 235 55.3
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.7e-66 256.9 241 55.2
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.9e-66 256.1 224 56.2
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.9e-65 253.4 241 53.5
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.9e-65 253.4 241 53.5
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.9e-65 253.4 241 53.5
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.4e-65 253.1 195 63.6
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 4.1e-65 252.3 205 62.0
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 5.4e-65 251.9 241 52.3
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 7.1e-65 251.5 196 64.3
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.6e-64 250.4 241 53.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.1e-64 250.0 206 62.1
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 4.6e-64 248.8 196 63.3
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 6.0e-64 248.4 218 61.5
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 7.8e-64 248.1 241 53.5
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 7.8e-64 248.1 198 62.6
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 7.8e-64 248.1 240 52.5
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 3.9e-63 245.7 241 50.2
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.5e-62 243.8 238 51.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 2.5e-62 243.0 242 52.9
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.8e-61 239.6 246 49.2
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 8.1e-61 238.0 259 52.9
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.8e-60 235.0 225 51.6
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 8.9e-60 234.6 197 60.4
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.6e-59 233.0 234 53.4
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.3e-58 230.7 231 50.2
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.1e-57 227.6 231 49.8
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.4e-57 226.5 253 47.8
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 5.4e-57 225.3 291 46.4
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.1e-56 223.4 237 52.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 3.9e-55 219.2 205 57.6
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 5.1e-55 218.8 185 60.5
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.5e-54 217.2 198 53.5
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 3.6e-53 212.6 240 51.2
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 9.0e-52 208.0 232 47.8
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.4e-51 206.1 233 47.6
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.8e-50 202.6 231 46.3
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 8.4e-50 201.4 232 46.1
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-47 194.5 237 43.0
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 2.1e-45 186.8 223 46.2
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 8.1e-45 184.9 184 53.8
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.1e-44 184.5 196 51.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-43 180.6 237 40.9
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.3e-42 177.6 268 41.0
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 6.4e-42 175.3 167 56.3
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 8.4e-42 174.9 241 42.3
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.6e-40 170.6 238 39.1
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.6e-40 169.1 243 39.5
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 2.4e-36 156.8 157 52.2
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-35 153.7 239 35.1
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 3.4e-35 152.9 229 38.9
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.4e-35 152.9 195 42.6
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 4.5e-35 152.5 237 40.1
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.6e-35 151.8 236 38.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 6.0e-32 142.1 112 58.9
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 7.9e-32 141.7 232 36.6
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 8.7e-31 138.3 230 34.8
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.9e-30 137.1 107 60.7
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 9.6e-30 134.8 117 55.6
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.4e-28 130.2 106 60.4
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.3e-26 124.4 106 64.2
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.7e-26 124.0 176 41.5
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.1e-25 121.3 107 56.1
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 5.5e-25 119.0 230 33.9
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-24 117.5 204 37.3
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 7.9e-24 115.2 108 53.7
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.9e-22 110.5 145 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 5.7e-22 109.0 105 54.3
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 5.9e-19 99.0 108 47.2
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.9e-18 96.7 101 45.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.7e-16 90.1 149 38.9
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 3.6e-16 89.7 112 47.3
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.0e-15 88.2 145 39.3
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 5.7e-14 82.4 159 35.8
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-12 76.3 69 53.6
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 4.1e-12 76.3 221 26.2
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.1e-08 63.9 69 40.6
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-07 61.6 104 36.5
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 1.4e-07 61.2 117 35.9
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.8e-07 60.8 75 45.3
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 1.8e-07 60.8 116 32.8
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 5.7e-06 55.8 91 36.3


User provided reference genes

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