Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 8.4e-94 347.1 180 100.0
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.8e-75 286.2 181 82.3
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 7.6e-71 270.8 185 77.8
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.5e-66 256.5 184 74.5
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 3.4e-55 218.8 179 65.9
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 7.4e-50 201.1 171 59.6
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 2.2e-49 199.5 188 55.9
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.4e-48 196.8 189 54.0
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.6e-47 193.4 170 57.6
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.0e-47 193.0 155 58.1
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 2.6e-47 192.6 155 58.7
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.5e-47 192.2 170 58.2
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 5.9e-47 191.4 155 58.1
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 1.0e-46 190.7 169 53.3
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.0e-46 190.7 155 56.1
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.7e-46 189.9 195 53.3
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.2e-46 189.5 155 56.8
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 2.2e-46 189.5 158 57.6
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 2.9e-46 189.1 155 57.4
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 5.0e-46 188.3 195 52.8
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.1e-45 187.2 170 55.9
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.9e-45 186.4 155 54.8
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 4.2e-45 185.3 155 55.5
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 5.5e-45 184.9 155 55.5
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.6e-44 183.3 184 54.3
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 3.6e-44 182.2 155 56.8
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 4.7e-44 181.8 169 53.8
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 4.7e-44 181.8 179 53.6
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 6.1e-44 181.4 172 53.5
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 8.0e-44 181.0 155 56.1
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.0e-43 180.6 166 54.2
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.4e-43 180.3 176 53.4
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.4e-43 180.3 155 54.2
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 1.8e-43 179.9 172 52.9
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.8e-43 179.9 166 53.6
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.2e-43 178.3 155 54.2
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 5.2e-43 178.3 168 53.0
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 5.2e-43 178.3 153 53.6
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 5.2e-43 178.3 155 55.5
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 8.8e-43 177.6 194 47.9
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 8.8e-43 177.6 176 51.7
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 8.8e-43 177.6 178 50.6
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 2.0e-42 176.4 169 53.3
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 2.6e-42 176.0 169 53.3
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 2.6e-42 176.0 182 51.1
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.6e-42 176.0 152 53.9
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 2.6e-42 176.0 155 55.5
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.3e-42 175.6 153 52.9
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 3.3e-42 175.6 161 50.9
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.4e-42 175.3 169 53.3
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.4e-42 175.3 169 53.3
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 7.5e-42 174.5 179 49.2
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 9.7e-42 174.1 153 51.6
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 9.7e-42 174.1 193 47.2
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 2.2e-41 172.9 169 52.7
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.2e-41 172.9 166 53.0
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 2.2e-41 172.9 157 53.5
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 2.8e-41 172.6 155 52.9
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.8e-41 172.6 153 51.0
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 3.7e-41 172.2 163 52.1
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 3.7e-41 172.2 163 52.1
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 3.7e-41 172.2 151 50.3
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 4.8e-41 171.8 152 52.6
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 4.8e-41 171.8 181 49.7
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 6.3e-41 171.4 191 47.1
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 8.2e-41 171.0 168 51.8
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 8.2e-41 171.0 169 52.1
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 8.2e-41 171.0 165 50.9
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 8.2e-41 171.0 155 54.8
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 1.1e-40 170.6 176 51.1
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.1e-40 170.6 163 52.1
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 1.1e-40 170.6 155 54.2
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.4e-40 170.2 185 47.0
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.4e-40 170.2 152 50.7
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 1.4e-40 170.2 153 52.3
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.8e-40 169.9 181 50.8
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 1.8e-40 169.9 177 47.5
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 1.8e-40 169.9 152 51.3
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.8e-40 169.9 162 49.4
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.4e-40 169.5 174 48.3
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 3.1e-40 169.1 162 48.8
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 5.3e-40 168.3 171 48.0
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 7.0e-40 167.9 160 51.2
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 9.1e-40 167.5 181 50.8
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 9.1e-40 167.5 170 50.6
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.2e-39 167.2 182 46.2
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 2.0e-39 166.4 151 50.3
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 2.7e-39 166.0 164 47.0
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.7e-39 164.5 152 52.0
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 7.7e-39 164.5 157 51.0
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.0e-38 164.1 179 47.5
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.7e-38 163.3 175 45.1
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.7e-38 163.3 169 45.0
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.7e-38 163.3 168 45.8
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 2.2e-38 162.9 157 49.7
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 2.2e-38 162.9 153 50.3
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 5.0e-38 161.8 167 47.9
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 1.5e-37 160.2 165 50.3
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.5e-37 160.2 153 47.7
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.5e-37 160.2 161 47.8
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 2.5e-37 159.5 165 50.3
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 3.2e-37 159.1 165 50.3
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 3.2e-37 159.1 174 48.9
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 3.2e-37 159.1 176 47.7
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 4.2e-37 158.7 184 45.7
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 5.5e-37 158.3 151 46.4
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.2e-36 157.1 181 48.1
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.2e-36 157.1 155 48.4
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 8.0e-36 154.5 165 49.7
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.4e-32 142.9 168 42.9
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 9.5e-29 131.0 175 44.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.4e-27 127.1 149 43.0
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 1.2e-26 124.0 124 50.8
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.8e-26 120.9 155 39.4
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.8e-26 120.9 155 39.4
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 2.2e-25 119.8 99 58.6
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 1.1e-24 117.5 103 55.3
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.1e-24 115.9 93 57.0
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 2.0e-23 113.2 90 53.3
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.9e-23 111.7 108 50.0
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 3.8e-22 109.0 162 36.4
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 8.6e-22 107.8 95 52.6
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 9.5e-21 104.4 115 50.4
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.4e-16 89.7 105 44.8
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 8.6e-14 81.3 77 51.9
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 4.7e-12 75.5 73 52.1
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.1e-11 74.3 69 44.9
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 4.0e-11 72.4 73 47.9
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 5.2e-11 72.0 145 29.7
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.2e-10 70.9 155 27.7
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.8e-10 68.6 71 47.9
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 5.8e-10 68.6 45 62.2
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 2.9e-09 66.2 57 54.4
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.7e-09 65.9 154 27.3
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 4.1e-08 62.4 68 42.6


User provided reference genes

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