Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 4.4e-50 201.1 106 100.0
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 2.2e-33 145.6 127 70.1
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 1.5e-29 132.9 118 63.6
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 9.2e-24 113.6 129 62.0
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 1.2e-20 103.2 125 56.8
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 6.2e-20 100.9 119 54.6
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 3.1e-19 98.6 128 56.2
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 4.0e-19 98.2 120 55.0
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.2e-18 96.7 105 60.0
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 7.5e-18 94.0 101 65.3
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 9.8e-18 93.6 121 57.0
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 1.3e-17 93.2 129 46.5
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 2.2e-17 92.4 113 52.2
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 4.9e-17 91.3 120 55.0
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.9e-16 89.4 106 54.7
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 2.4e-16 89.0 121 48.8
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 7.1e-16 87.4 114 52.6
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 9.2e-16 87.0 122 49.2
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 1.6e-15 86.3 113 54.0
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 2.1e-15 85.9 113 49.6
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 2.1e-15 85.9 113 49.6
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 2.1e-15 85.9 113 49.6
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 2.7e-15 85.5 111 49.5
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 2.7e-15 85.5 117 47.9
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.3e-14 83.2 77 58.4
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 1.7e-14 82.8 119 47.1
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 1.7e-14 82.8 60 73.3
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 6.6e-14 80.9 76 57.9
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 8.6e-14 80.5 124 46.8
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 8.6e-14 80.5 61 67.2
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.1e-13 80.1 77 58.4
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.9e-13 79.3 136 45.6
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.9e-13 79.3 113 47.8
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.9e-13 79.3 111 51.4
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 2.5e-13 79.0 54 74.1
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 3.3e-13 78.6 114 47.4
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 4.3e-13 78.2 100 50.0
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 4.3e-13 78.2 87 55.2
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 4.3e-13 78.2 123 46.3
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 5.6e-13 77.8 70 64.3
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 5.6e-13 77.8 77 57.1
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 5.6e-13 77.8 77 55.8
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 9.5e-13 77.0 104 47.1
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 9.5e-13 77.0 99 52.5
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 1.2e-12 76.6 77 61.0
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 1.6e-12 76.3 94 58.5
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 2.1e-12 75.9 62 64.5
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 3.6e-12 75.1 72 58.3
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 3.6e-12 75.1 108 46.3
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 4.7e-12 74.7 100 50.0
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.1e-11 73.6 114 43.9
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 1.8e-11 72.8 72 58.3
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 1.8e-11 72.8 95 44.2
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 1.8e-11 72.8 112 42.0
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 3.1e-11 72.0 88 46.6
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 3.1e-11 72.0 91 49.5
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 5.2e-11 71.2 89 48.3
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 8.9e-11 70.5 113 46.9
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 1.5e-10 69.7 120 39.2
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.5e-10 69.7 120 44.2
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.5e-10 69.7 120 44.2
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 1.5e-10 69.7 102 46.1
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 2.0e-10 69.3 112 48.2
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 2.6e-10 68.9 88 43.2
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 2.6e-10 68.9 88 43.2
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 2.6e-10 68.9 88 43.2
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 3.4e-10 68.6 86 47.7
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 5.8e-10 67.8 88 43.2
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 7.6e-10 67.4 85 45.9
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 7.6e-10 67.4 85 45.9
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 7.6e-10 67.4 88 43.2
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 7.6e-10 67.4 93 44.1
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 1.3e-09 66.6 85 44.7
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 1.3e-09 66.6 87 44.8
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 1.3e-09 66.6 98 48.0
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 1.7e-09 66.2 92 50.0
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 1.7e-09 66.2 88 42.0
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 1.7e-09 66.2 90 43.3
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 1.7e-09 66.2 88 43.2
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 1.7e-09 66.2 92 45.7
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 1.7e-09 66.2 80 47.5
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 2.2e-09 65.9 74 47.3
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 2.2e-09 65.9 71 52.1
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 2.9e-09 65.5 106 40.6
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 2.9e-09 65.5 77 48.1
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 2.9e-09 65.5 77 50.6
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 4.9e-09 64.7 88 42.0
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 4.9e-09 64.7 87 44.8
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 6.4e-09 64.3 88 50.0
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 8.4e-09 63.9 92 44.6
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 1.1e-08 63.5 89 43.8
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 1.1e-08 63.5 85 42.4
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 1.1e-08 63.5 85 47.1
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 1.1e-08 63.5 121 35.5
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 1.4e-08 63.2 74 50.0
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.9e-08 62.8 61 52.5
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 2.4e-08 62.4 53 64.2
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 3.2e-08 62.0 63 49.2
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 4.1e-08 61.6 86 48.8
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 4.1e-08 61.6 73 46.6
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 5.4e-08 61.2 110 38.2
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 7.1e-08 60.8 76 48.7
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 7.1e-08 60.8 97 42.3
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 9.2e-08 60.5 89 40.4
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 9.2e-08 60.5 89 40.4
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 1.2e-07 60.1 85 42.4
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.2e-07 60.1 95 36.8
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 1.6e-07 59.7 71 46.5
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 3.5e-07 58.5 81 45.7
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 3.5e-07 58.5 91 44.0
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 4.6e-07 58.2 71 47.9
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 6.0e-07 57.8 61 54.1
Sed0010162 Sechium edule HOM05D024969 ORTHO05D025069 6.0e-07 57.8 121 37.2
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 7.8e-07 57.4 76 46.1
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 7.8e-07 57.4 71 46.5
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 1.0e-06 57.0 79 46.8
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 1.0e-06 57.0 76 46.1
Sed0005978 Sechium edule HOM05D024969 ORTHO05D025069 1.0e-06 57.0 82 45.1
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 1.0e-06 57.0 110 38.2
Gohir.A04G137350 Gossypium hirsutum HOM05D034510 ORTHO05D008112 1.3e-06 56.6 116 35.3
Gohir.D04G180550 Gossypium hirsutum HOM05D034510 ORTHO05D047560 1.3e-06 56.6 116 36.2
Gorai.012G173700 Gossypium raimondii HOM05D034510 ORTHO05D047560 2.3e-06 55.8 104 37.5
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 2.3e-06 55.8 88 44.3
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 2.3e-06 55.8 104 35.6
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 5.1e-06 54.7 128 38.3
ClCG09G004960 Citrullus lanatus HOM05D024969 ORTHO05D025069 6.6e-06 54.3 59 52.5
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 6.6e-06 54.3 89 41.6
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 8.6e-06 53.9 55 47.3
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 8.6e-06 53.9 46 56.5


User provided reference genes

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