Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 6.4e-105 384.0 187 100.0
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 3.8e-89 331.6 187 86.1
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.6e-87 324.7 187 81.8
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 5.1e-86 321.2 187 80.7
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.5e-85 319.7 187 85.6
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-84 315.8 181 81.8
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.5e-82 309.7 187 78.1
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.0e-82 309.3 187 80.2
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 7.7e-82 307.4 187 79.1
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.0e-81 307.0 186 78.0
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.3e-81 306.6 187 77.5
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.2e-81 305.8 184 78.3
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.9e-81 305.4 187 77.5
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.4e-80 303.1 182 78.0
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 5.5e-80 301.2 188 76.1
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.2e-79 300.1 188 76.1
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 6.1e-79 297.7 184 77.7
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.5e-77 293.1 182 75.8
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.0e-77 292.7 173 80.3
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.3e-76 290.0 182 75.8
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 3.7e-76 288.5 182 74.7
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 3.7e-76 288.5 182 73.6
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.4e-75 286.6 182 73.1
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.8e-75 286.2 187 72.7
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.8e-75 286.2 181 74.0
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.5e-74 283.1 189 73.5
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.0e-74 282.7 186 73.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.0e-74 282.7 186 73.7
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.4e-74 282.0 188 71.8
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.3e-73 280.0 182 74.7
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.7e-73 279.6 184 71.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.7e-73 279.6 186 73.1
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.2e-73 279.3 185 71.9
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 2.9e-73 278.9 184 71.7
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.9e-73 278.9 182 73.1
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 3.8e-73 278.5 185 70.8
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.8e-73 278.5 187 71.1
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 6.5e-73 277.7 181 72.9
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.5e-73 277.7 185 71.4
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.1e-72 276.9 182 71.4
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.4e-72 276.6 166 78.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.4e-72 276.6 187 70.1
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.5e-72 275.8 186 72.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 7.2e-72 274.2 185 70.8
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 9.4e-72 273.9 188 72.9
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 9.4e-72 273.9 184 70.7
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.2e-71 273.5 189 70.9
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 2.1e-71 272.7 185 73.0
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 4.7e-71 271.6 184 71.2
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 7.9e-71 270.8 182 71.4
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.4e-70 270.0 181 71.8
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.3e-70 269.2 187 68.4
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.3e-70 269.2 185 70.8
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 3.0e-70 268.9 182 70.3
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 3.0e-70 268.9 182 71.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.0e-70 268.9 185 70.8
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.0e-69 266.2 182 69.8
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 2.6e-69 265.8 183 68.3
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.6e-69 265.8 187 67.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 5.7e-69 264.6 186 68.8
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 9.7e-69 263.8 186 68.8
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.2e-68 262.7 186 69.4
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.1e-67 260.4 182 70.3
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.8e-67 259.6 186 67.7
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 2.4e-67 259.2 196 63.8
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.3e-67 258.1 179 69.8
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 7.0e-67 257.7 182 65.9
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 9.1e-67 257.3 193 62.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 9.1e-67 257.3 173 71.7
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 9.1e-67 257.3 160 76.9
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 5.9e-66 254.6 182 65.4
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 7.7e-66 254.2 180 66.7
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.7e-65 253.1 188 66.5
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.2e-65 252.7 196 65.3
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.9e-65 252.3 165 73.3
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 5.0e-65 251.5 186 67.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.1e-64 250.4 186 66.1
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.1e-64 250.4 184 67.9
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.2e-64 248.8 181 66.3
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 9.4e-64 247.3 185 64.3
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 9.4e-64 247.3 185 64.3
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 9.4e-64 247.3 199 61.3
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 9.4e-64 247.3 133 88.0
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.2e-63 246.9 179 66.5
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.6e-63 246.5 182 61.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 2.1e-63 246.1 181 66.3
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.0e-62 243.8 179 65.9
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.3e-62 242.7 164 70.7
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.0e-62 242.3 186 64.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.0e-62 242.3 186 64.0
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 4.0e-62 241.9 181 65.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.8e-62 240.7 181 65.7
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 8.8e-62 240.7 166 67.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 9.7e-61 237.3 166 68.7
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 9.7e-61 237.3 180 66.1
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.7e-60 236.5 176 62.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.2e-60 236.1 184 60.9
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 8.2e-60 234.2 193 61.1
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 8.2e-60 234.2 181 58.6
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 8.2e-60 234.2 133 79.7
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 7.0e-59 231.1 185 57.8
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.6e-58 229.9 167 70.1
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 7.7e-58 227.6 192 56.8
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.1e-56 223.8 184 60.9
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.9e-56 223.0 178 65.2
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.9e-56 223.0 180 57.2
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.1e-55 219.5 133 75.2
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 3.6e-55 218.8 138 76.1
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.0e-54 217.2 151 68.2
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 5.7e-53 211.5 166 62.7
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 7.5e-53 211.1 161 60.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 8.3e-52 207.6 190 54.2
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.4e-51 206.1 182 54.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 6.5e-49 198.0 165 62.4
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 5.2e-46 188.3 144 63.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.4e-45 185.3 112 74.1
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-44 183.3 170 52.4
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.8e-44 182.6 172 51.2
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 8.3e-44 181.0 187 51.9
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-43 180.3 170 51.8
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 9.1e-43 177.6 191 48.2
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.0e-41 174.1 156 55.1
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-39 167.2 164 49.4
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.0e-38 162.5 131 58.0
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 4.9e-36 155.2 107 64.5
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.3e-36 154.5 128 57.0
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.2e-34 150.6 183 43.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 5.9e-34 148.3 185 43.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 8.6e-33 144.4 182 41.8
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-32 143.7 172 44.2
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.1e-31 139.8 88 72.7
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.7e-28 130.2 91 64.8
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.7e-25 120.2 190 37.4
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-20 104.0 117 46.2
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-17 93.2 88 48.9
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 2.4e-11 73.2 108 38.9
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 3.2e-11 72.8 47 76.6
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 4.6e-10 68.9 47 70.2
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 7.8e-10 68.2 51 68.6
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 5.1e-09 65.5 50 66.0
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.6e-07 60.5 50 58.0


User provided reference genes

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