Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 5.2e-159 564.3 281 100.0
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.4e-148 529.6 281 94.0
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 2.4e-135 485.7 280 85.7
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 6.9e-135 484.2 280 85.4
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 5.8e-134 481.1 275 85.5
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 2.2e-133 479.2 286 85.0
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 2.9e-133 478.8 280 85.0
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 3.2e-132 475.3 286 84.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.2e-126 456.8 244 92.6
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 3.2e-124 448.7 226 96.5
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 5.5e-124 448.0 284 80.3
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 2.1e-120 436.0 291 75.6
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 3.4e-118 428.7 296 73.3
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 3.4e-118 428.7 281 75.1
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 1.3e-117 426.8 283 76.7
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.3e-117 426.8 290 75.2
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 1.7e-117 426.4 276 76.8
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 8.4e-117 424.1 284 75.4
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.4e-116 423.3 282 74.5
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.2e-116 422.2 284 74.6
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 4.2e-116 421.8 284 74.6
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 5.5e-116 421.4 284 75.4
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 2.7e-115 419.1 285 74.0
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 2.7e-115 419.1 293 72.4
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 3.5e-115 418.7 283 74.9
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.3e-114 416.8 288 72.2
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.8e-114 416.4 288 73.6
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 8.7e-114 414.1 289 72.0
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 2.5e-113 412.5 287 72.1
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 9.6e-113 410.6 274 74.1
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 2.1e-112 409.5 244 82.4
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 8.2e-112 407.5 277 74.7
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.1e-111 407.1 284 72.2
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 3.1e-111 405.6 280 72.9
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 7.6e-110 401.0 232 80.6
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 1.0e-109 400.6 253 76.3
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 2.9e-109 399.1 279 72.8
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 3.2e-108 395.6 255 75.3
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 3.2e-108 395.6 223 82.5
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 9.3e-108 394.0 280 73.2
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 1.2e-107 393.7 275 71.3
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 4.6e-107 391.7 279 70.3
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 4.6e-107 391.7 279 70.6
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.0e-106 390.6 281 70.5
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 1.3e-106 390.2 275 72.0
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 3.9e-106 388.7 283 68.9
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 6.7e-106 387.9 281 68.7
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.5e-105 386.7 228 80.7
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 5.7e-105 384.8 221 81.9
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 9.7e-105 384.0 276 69.6
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.3e-104 383.6 277 67.9
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 6.3e-104 381.3 276 68.5
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 6.3e-104 381.3 275 67.3
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.4e-103 380.2 284 66.9
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 2.4e-103 379.4 280 67.1
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 3.1e-103 379.0 282 68.8
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 6.9e-103 377.9 287 66.6
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 6.9e-103 377.9 290 65.9
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 6.9e-103 377.9 241 75.9
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 1.5e-102 376.7 288 65.6
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.5e-102 376.7 222 78.4
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 2.0e-102 376.3 288 65.6
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.6e-102 375.9 236 74.6
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 3.4e-102 375.6 283 68.6
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 3.4e-102 375.6 231 76.2
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 5.9e-102 374.8 237 75.9
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 5.9e-102 374.8 270 68.5
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 5.9e-102 374.8 277 68.2
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 7.7e-102 374.4 288 64.9
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 7.7e-102 374.4 220 80.0
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.0e-101 374.0 288 65.6
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 1.0e-101 374.0 242 73.6
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 2.9e-101 372.5 227 81.1
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 2.9e-101 372.5 282 67.0
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 1.1e-100 370.5 231 74.9
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 1.4e-100 370.2 283 68.2
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 9.4e-100 367.5 278 67.6
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.2e-99 367.1 278 66.5
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.6e-99 366.7 288 63.2
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.6e-99 366.7 283 66.1
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.1e-99 366.3 278 66.2
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 2.7e-99 365.9 292 65.1
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.7e-99 365.9 277 64.6
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 4.6e-99 365.2 232 75.0
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 4.6e-99 365.2 290 63.8
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.9e-98 362.1 249 70.7
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 5.1e-98 361.7 288 62.5
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 6.7e-98 361.3 277 64.3
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.1e-97 360.5 273 65.9
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 1.5e-97 360.1 289 62.6
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 3.7e-96 355.5 290 62.1
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 1.4e-95 353.6 295 60.3
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 1.7e-93 346.7 286 63.3
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.2e-93 346.3 278 62.9
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 1.4e-92 343.6 313 57.8
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 1.6e-91 340.1 233 73.4
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 9.7e-89 330.9 239 71.5
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 1.3e-88 330.5 280 62.1
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 4.8e-88 328.6 280 61.8
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 7.0e-87 324.7 250 65.6
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.2e-85 319.7 228 67.5
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.1e-84 317.4 224 70.1
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 1.9e-84 316.6 277 56.0
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.9e-84 316.6 231 65.8
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 5.5e-84 315.1 277 58.8
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.2e-81 307.4 234 66.2
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 2.6e-81 306.2 178 80.3
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 9.1e-79 297.7 233 69.1
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 9.1e-79 297.7 232 59.9
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 3.5e-78 295.8 237 61.6
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 1.0e-77 294.3 179 77.1
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.5e-76 289.7 164 81.1
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 7.5e-73 278.1 225 61.3
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.8e-72 276.2 167 77.8
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 3.5e-70 269.2 214 60.7
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 5.9e-70 268.5 164 76.8
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 6.3e-64 248.4 164 72.0
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 1.2e-57 227.6 193 61.7
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 2.2e-56 223.4 136 75.0
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 3.7e-56 222.6 155 67.1
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 1.1e-55 221.1 191 65.4
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 5.4e-55 218.8 194 61.3
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 1.1e-52 211.1 242 53.7
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 4.0e-50 202.6 156 64.7
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 3.4e-49 199.5 230 43.5
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 8.3e-48 194.9 162 61.7
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 1.2e-43 181.0 210 46.7
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 4.0e-42 176.0 133 62.4
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 9.2e-31 138.3 91 70.3
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 7.8e-30 135.2 178 48.3
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.7e-24 117.5 90 60.0
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 7.1e-23 112.1 133 50.4
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-20 104.0 127 46.5
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.4e-18 97.8 80 61.2
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 1.9e-12 77.4 119 35.3
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 3.7e-11 73.2 88 46.6
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 4.8e-11 72.8 113 38.1
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.4e-09 66.6 54 61.1


User provided reference genes

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