Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 4.6e-109 397.9 200 100.0
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 6.7e-76 287.7 194 76.3
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 2.6e-72 275.8 194 72.7
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 2.6e-59 232.6 187 66.3
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 5.7e-59 231.5 187 64.7
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 1.8e-57 226.5 189 63.0
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 4.1e-57 225.3 189 63.5
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.9e-54 216.5 196 61.2
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.9e-54 216.5 196 61.2
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.9e-54 216.5 196 61.2
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 5.2e-52 208.4 163 65.0
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 3.7e-50 202.2 185 60.0
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.2e-46 188.7 158 59.5
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 1.2e-45 187.2 158 58.9
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 4.0e-44 182.2 188 50.0
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 5.2e-44 181.8 194 50.0
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 8.9e-44 181.0 196 49.0
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 4.4e-43 178.7 153 58.8
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 4.4e-43 178.7 167 56.9
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.3e-42 177.2 163 57.7
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 2.8e-42 176.0 146 60.3
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 3.7e-42 175.6 152 57.2
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 6.3e-42 174.9 189 50.8
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 6.3e-42 174.9 184 53.3
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.1e-41 174.1 148 56.1
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 1.1e-41 174.1 193 50.3
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 1.4e-41 173.7 182 51.1
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 5.4e-41 171.8 171 54.4
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.6e-40 170.2 182 50.5
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 2.0e-40 169.9 192 48.4
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.7e-39 166.8 189 48.1
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 1.7e-39 166.8 153 57.5
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 1.7e-39 166.8 146 56.2
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.7e-39 166.8 148 58.1
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 2.9e-39 166.0 140 58.6
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 3.8e-39 165.6 185 50.8
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 5.0e-39 165.2 190 47.9
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 5.0e-39 165.2 158 56.3
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 5.0e-39 165.2 194 49.5
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 5.0e-39 165.2 196 48.0
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 8.6e-39 164.5 166 54.2
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 1.1e-38 164.1 197 49.7
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.3e-38 162.5 100 72.0
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 4.3e-38 162.2 199 46.2
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 4.3e-38 162.2 168 50.6
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 5.6e-38 161.8 199 48.7
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.2e-37 160.6 189 51.3
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-37 160.2 151 56.3
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.6e-37 160.2 194 47.9
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 1.6e-37 160.2 146 54.1
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 3.6e-37 159.1 189 48.7
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 3.6e-37 159.1 107 66.4
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 4.7e-37 158.7 127 61.4
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 1.8e-36 156.8 183 47.0
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 2.3e-36 156.4 185 45.4
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 5.2e-36 155.2 98 70.4
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 5.2e-36 155.2 143 53.8
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 6.8e-36 154.8 124 61.3
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 8.9e-36 154.5 179 49.2
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 3.4e-35 152.5 136 54.4
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 5.8e-35 151.8 187 47.6
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 7.5e-35 151.4 109 63.3
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 1.7e-34 150.2 186 45.7
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 2.2e-34 149.8 191 46.1
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 2.2e-34 149.8 166 47.0
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 2.2e-34 149.8 197 45.2
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 3.7e-34 149.1 188 47.3
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 3.7e-34 149.1 102 66.7
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 4.9e-34 148.7 107 60.7
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 4.9e-34 148.7 191 46.1
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 6.4e-34 148.3 112 60.7
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 6.4e-34 148.3 121 57.9
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 8.3e-34 147.9 170 45.9
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.1e-33 147.5 107 60.7
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.4e-33 147.1 97 68.0
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 1.4e-33 147.1 127 59.1
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 1.8e-33 146.7 197 44.2
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 2.4e-33 146.4 112 59.8
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 2.4e-33 146.4 108 60.2
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 5.4e-33 145.2 134 54.5
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 7.0e-33 144.8 142 51.4
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 9.2e-33 144.4 186 46.2
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.2e-32 144.1 187 44.4
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 2.0e-32 143.3 99 64.6
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.0e-32 143.3 99 64.6
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.0e-32 143.3 99 64.6
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 2.7e-32 142.9 192 45.3
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.5e-32 142.5 114 57.0
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.5e-32 142.5 99 65.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.5e-32 142.5 192 43.2
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 4.6e-32 142.1 150 48.0
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 7.8e-32 141.4 183 44.8
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 1.0e-31 141.0 185 42.7
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.0e-31 141.0 196 42.3
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 1.3e-31 140.6 192 45.3
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.7e-31 140.2 169 47.9
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 2.3e-31 139.8 192 45.3
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 2.3e-31 139.8 83 74.7
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 3.0e-31 139.4 202 42.1
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 3.9e-31 139.0 205 42.0
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 5.0e-31 138.7 191 45.0
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 5.0e-31 138.7 96 67.7
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 5.0e-31 138.7 132 53.8
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 8.6e-31 137.9 99 63.6
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 8.6e-31 137.9 99 62.6
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 1.9e-30 136.7 205 41.0
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 1.9e-30 136.7 205 41.0
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 2.5e-30 136.3 202 42.1
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 5.6e-30 135.2 197 42.1
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 9.5e-30 134.4 149 48.3
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 2.1e-29 133.3 114 53.5
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 8.0e-29 131.3 179 45.3
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 8.9e-28 127.9 127 52.8
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 1.3e-26 124.0 75 72.0
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 2.2e-26 123.2 87 62.1
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 8.3e-26 121.3 108 52.8
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.1e-25 120.9 101 54.5
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 3.0e-23 112.8 89 57.3
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.1e-22 110.9 114 46.5
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.9e-22 110.2 72 68.1
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.8e-19 98.6 95 51.6
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 9.9e-19 97.8 101 49.5
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 2.9e-18 96.3 97 49.5
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 8.3e-18 94.7 135 39.3
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 2.3e-15 86.7 80 50.0
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.5e-14 84.0 105 45.7
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 7.3e-14 81.6 49 69.4
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.6e-13 80.5 72 51.4
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.8e-13 79.7 101 42.6
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.4e-11 72.8 87 47.1
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 5.4e-09 65.5 52 51.9
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.2e-08 64.3 87 39.1
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 5.1e-07 58.9 79 34.2
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 6.6e-07 58.5 45 55.6
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 9.6e-06 54.7 137 32.1


User provided reference genes

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