Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.5e-167 592.0 299 100.0
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.5e-127 459.9 283 81.6
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.1e-125 453.8 281 83.6
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.7e-123 446.4 284 81.3
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.7e-123 446.4 284 81.3
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.3e-94 350.5 266 68.4
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 6.5e-91 338.2 266 68.0
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 4.4e-79 298.9 292 57.9
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 1.4e-77 293.9 254 63.8
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.2e-76 290.8 267 59.9
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.2e-76 290.8 257 61.1
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.5e-76 290.4 259 61.8
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 2.6e-76 289.7 270 60.4
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.0e-75 287.7 261 60.9
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.4e-74 283.9 249 60.6
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.8e-72 276.9 255 58.0
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.4e-71 272.3 273 54.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.0e-67 261.2 272 53.7
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 8.5e-67 258.1 272 54.4
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-66 256.9 263 53.6
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.5e-66 256.5 261 52.9
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.4e-66 254.6 271 55.4
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.1e-65 253.4 264 58.3
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.7e-65 253.1 268 55.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 3.6e-65 252.7 284 51.1
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.6e-65 252.7 268 52.6
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.1e-65 251.9 268 52.6
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.1e-65 251.9 268 52.6
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 8.0e-65 251.5 268 53.7
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.8e-64 250.4 281 50.2
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.0e-64 249.6 269 52.0
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.0e-64 249.2 268 52.2
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.2e-64 248.8 267 52.1
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 5.2e-64 248.8 261 54.4
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.0e-63 246.9 268 56.3
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.6e-63 246.5 268 52.6
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.3e-63 246.1 272 52.9
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 4.4e-63 245.7 263 52.9
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 5.7e-63 245.4 269 51.3
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 7.5e-63 245.0 267 50.6
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.7e-62 243.8 268 51.5
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 6.3e-62 241.9 265 50.2
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.8e-61 240.4 265 51.3
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.8e-61 240.4 266 51.5
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 2.4e-61 240.0 280 50.4
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.0e-60 236.9 266 50.4
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 2.0e-60 236.9 260 51.2
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.7e-60 236.5 259 50.6
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.5e-60 235.7 258 52.7
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 5.9e-60 235.3 269 50.2
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 5.0e-59 232.3 277 50.2
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.1e-58 231.1 262 52.3
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.9e-58 230.3 258 51.9
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 5.5e-58 228.8 254 51.6
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.7e-57 226.5 273 48.7
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 6.1e-57 225.3 262 50.0
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 6.1e-57 225.3 259 48.6
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.0e-56 224.6 274 47.1
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.3e-56 223.4 264 51.1
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 6.8e-56 221.9 264 50.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.2e-55 221.1 260 49.2
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-55 221.1 265 47.5
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.5e-55 220.7 266 49.6
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.6e-55 219.9 252 49.6
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.6e-55 219.9 257 48.6
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 3.4e-55 219.5 264 50.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 5.7e-55 218.8 269 49.1
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.3e-54 217.6 244 52.5
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.7e-54 216.1 220 53.6
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.8e-54 215.7 267 49.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-53 213.4 219 53.0
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 7.0e-53 211.8 261 50.2
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 7.0e-53 211.8 265 50.2
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.1e-53 211.5 267 46.8
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.2e-52 211.1 239 50.2
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.2e-52 211.1 267 47.6
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 4.5e-52 209.1 265 46.8
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 5.9e-52 208.8 262 48.5
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 7.7e-52 208.4 274 45.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.7e-52 208.4 260 48.1
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 7.7e-52 208.4 257 50.6
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.3e-51 206.8 218 52.3
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.5e-50 204.1 260 46.2
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.5e-50 204.1 272 43.0
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.5e-50 203.4 267 45.7
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.2e-50 202.6 261 48.3
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 9.5e-50 201.4 276 46.4
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 9.5e-50 201.4 271 44.6
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.3e-48 196.8 259 46.7
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 5.2e-48 195.7 253 44.7
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.2e-47 194.5 252 47.6
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 3.4e-47 193.0 258 46.9
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.4e-47 193.0 260 44.2
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 5.7e-47 192.2 254 45.7
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 7.5e-47 191.8 256 46.9
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 7.5e-47 191.8 178 55.6
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.7e-46 190.7 255 46.3
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.3e-46 188.3 259 44.4
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.4e-45 186.8 256 44.1
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.1e-45 186.4 260 41.5
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 4.1e-45 186.0 253 44.7
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 7.0e-45 185.3 248 42.7
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.6e-44 184.1 259 44.8
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 5.9e-44 182.2 248 42.7
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 5.9e-44 182.2 262 43.9
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.7e-43 180.6 251 43.4
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 2.3e-43 180.3 250 42.4
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.9e-43 179.9 251 43.8
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 3.9e-43 179.5 251 43.8
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.5e-42 177.6 251 43.8
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 5.6e-42 175.6 260 43.1
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 5.6e-42 175.6 260 43.1
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.6e-41 174.1 262 43.5
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 1.6e-41 174.1 253 42.7
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 2.8e-41 173.3 256 43.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 4.7e-41 172.6 253 42.3
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 1.0e-40 171.4 180 50.0
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.4e-40 171.0 254 39.8
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.4e-40 171.0 262 42.0
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 6.8e-40 168.7 288 37.5
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.2e-39 167.9 254 42.5
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-39 167.9 115 71.3
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.2e-39 167.9 290 37.2
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.7e-38 164.1 114 71.1
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.4e-38 162.2 166 51.8
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 6.4e-38 162.2 251 41.0
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.2e-37 159.8 178 48.9
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 7.0e-37 158.7 263 40.3
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.2e-36 157.9 263 38.8
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.2e-36 157.9 251 40.6
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-36 157.9 177 48.6
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.6e-35 152.1 187 46.5
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.6e-35 152.1 187 46.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 8.6e-35 151.8 276 37.0
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.1e-34 151.4 249 37.8
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.3e-34 149.8 196 44.9
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.8e-33 146.7 196 43.9
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.6e-33 146.4 118 63.6
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.7e-33 146.0 152 52.0
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 4.7e-33 146.0 168 47.6
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.2e-33 145.6 204 46.1
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 4.9e-30 136.0 177 44.6
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 9.2e-29 131.7 158 43.7
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.6e-28 131.0 213 39.0
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 4.6e-28 129.4 149 47.0
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-25 121.3 115 53.0
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.6e-25 120.9 107 55.1
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 3.5e-20 103.2 170 42.4
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.0e-19 100.1 82 59.8
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.8e-17 93.6 102 44.1
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.8e-17 93.6 97 48.5
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 8.9e-16 88.6 255 31.0
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 9.9e-15 85.1 284 26.4
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 2.2e-14 84.0 90 40.0
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.2e-13 80.1 70 54.3
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.0e-11 73.6 127 32.3
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 1.9e-10 70.9 136 30.9


User provided reference genes

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