Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 2.3e-182 642.1 321 100.0
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 3.3e-157 558.5 315 89.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 1.7e-153 546.2 310 89.0
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 3.7e-153 545.0 344 82.6
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 1.6e-143 513.1 306 82.7
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 1.2e-140 503.4 314 79.6
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 3.1e-139 498.8 314 80.9
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 5.3e-139 498.0 314 78.7
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 6.9e-139 497.7 313 78.9
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 3.8e-137 491.9 315 79.0
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 4.2e-136 488.4 314 79.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 7.1e-136 487.6 314 79.0
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 3.5e-135 485.3 314 78.7
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 3.0e-126 455.7 310 72.6
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 7.4e-125 451.1 308 72.4
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 2.8e-124 449.1 305 71.5
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.3e-123 444.9 315 72.1
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.4e-122 442.2 315 71.7
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 4.5e-122 441.8 315 71.7
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 5.8e-122 441.4 311 71.7
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 1.7e-121 439.9 310 70.6
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.7e-121 439.9 305 69.8
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 2.2e-121 439.5 296 70.9
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 6.4e-121 438.0 315 70.8
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 8.4e-121 437.6 305 68.9
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 7.1e-120 434.5 319 70.5
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 1.2e-119 433.7 313 70.3
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 2.1e-119 433.0 294 72.1
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.0e-118 430.6 317 69.4
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.3e-118 430.3 315 67.6
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 1.8e-118 429.9 300 72.7
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 3.0e-118 429.1 313 69.6
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 3.0e-118 429.1 303 69.3
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 8.7e-118 427.6 326 66.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.6e-117 424.9 343 65.6
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 7.4e-117 424.5 302 68.9
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 1.6e-116 423.3 303 68.6
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 3.7e-116 422.2 286 72.4
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 3.7e-116 422.2 296 71.6
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 1.4e-115 420.2 312 70.5
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.4e-115 419.5 305 67.5
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 6.9e-115 417.9 278 72.3
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.2e-114 417.2 304 67.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 2.6e-114 416.0 315 68.3
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 4.5e-114 415.2 308 66.9
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 5.8e-114 414.8 304 67.1
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 7.6e-114 414.5 309 66.7
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.0e-113 414.1 308 67.2
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.7e-113 413.3 316 68.7
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 4.9e-113 411.8 294 68.0
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.9e-113 411.8 320 65.6
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.9e-112 409.8 278 71.2
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 4.2e-112 408.7 302 65.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 4.2e-112 408.7 302 65.9
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 4.2e-112 408.7 302 65.9
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 4.2e-112 408.7 302 65.9
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 5.5e-112 408.3 306 65.4
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 7.1e-112 407.9 325 65.2
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 9.3e-112 407.5 313 65.2
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 9.3e-112 407.5 312 67.0
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 9.3e-112 407.5 316 65.8
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 2.1e-111 406.4 316 68.0
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 2.7e-111 406.0 277 71.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 3.5e-111 405.6 311 67.8
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 1.3e-110 403.7 298 67.8
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 3.0e-110 402.5 301 65.8
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 5.1e-110 401.7 309 64.4
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.7e-110 401.4 307 66.8
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 8.7e-110 401.0 333 63.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 3.3e-109 399.1 316 66.1
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 5.7e-109 398.3 281 69.4
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 7.4e-109 397.9 326 62.6
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 3.7e-108 395.6 290 67.6
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 8.2e-108 394.4 315 62.2
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 8.2e-108 394.4 328 62.8
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 8.2e-108 394.4 293 66.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.1e-107 394.0 290 67.2
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.4e-107 393.7 301 65.4
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 1.4e-107 393.7 340 62.6
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.4e-107 392.9 307 62.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 2.4e-107 392.9 301 63.5
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.5e-106 390.2 307 62.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.0e-106 389.8 305 63.6
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 2.6e-106 389.4 362 56.9
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 3.4e-106 389.0 308 62.7
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 3.4e-106 389.0 314 63.1
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 3.4e-106 389.0 307 65.1
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.3e-105 387.1 315 64.8
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 1.7e-105 386.7 308 62.3
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 1.7e-105 386.7 308 62.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 2.5e-104 382.9 287 66.6
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 4.2e-104 382.1 267 69.7
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 9.4e-104 380.9 309 62.5
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 2.7e-103 379.4 306 62.1
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 4.6e-103 378.6 463 48.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.0e-102 377.5 306 61.8
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 2.3e-102 376.3 348 57.8
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 3.9e-102 375.6 290 64.1
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 3.9e-102 375.6 306 61.4
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 8.8e-102 374.4 281 66.2
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 1.2e-98 364.0 319 58.0
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.5e-98 363.6 329 59.6
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 1.7e-97 360.1 289 63.0
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 1.1e-96 357.5 319 57.1
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.9e-96 356.7 273 64.8
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 1.9e-96 356.7 221 78.3
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 4.7e-95 352.1 233 73.0
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 8.2e-92 341.3 305 58.7
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 5.3e-91 338.6 318 57.2
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 5.3e-91 338.6 276 60.1
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 3.5e-90 335.9 302 57.6
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.8e-89 332.4 226 72.6
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.6e-87 325.9 240 67.9
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 8.0e-87 324.7 176 88.6
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 4.1e-83 312.4 289 56.7
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.5e-82 309.3 197 76.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.7e-81 307.0 277 58.1
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 7.7e-74 281.6 205 68.8
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.7e-73 280.4 194 72.7
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.4e-67 260.8 171 69.6
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.3e-65 254.2 262 52.7
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 8.6e-65 251.5 184 67.4
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.5e-64 250.0 301 47.8
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 4.7e-63 245.7 161 72.0
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 7.8e-58 228.4 266 50.0
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 7.8e-58 228.4 167 66.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.9e-57 226.1 160 69.4
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.9e-56 223.8 301 44.5
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.1e-55 220.3 299 45.2
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.4e-54 217.6 298 44.0
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 4.9e-52 209.1 189 58.2
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.3e-49 200.3 133 69.9
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.5e-48 196.8 106 91.5
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.3e-46 190.3 128 71.1
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.0e-41 174.9 314 37.9
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 3.9e-41 172.9 314 37.6
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 7.3e-40 168.7 102 78.4
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.6e-39 166.4 146 61.0
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 5.2e-30 136.0 226 39.8
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 2.9e-28 130.2 137 56.9
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 2.7e-18 97.1 71 70.4
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.6e-15 87.8 60 73.3
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 8.1e-15 85.5 60 68.3
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 7.6e-13 79.0 92 45.7
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 5.4e-11 72.8 188 30.9
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.9e-08 64.3 35 82.9
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 1.9e-08 64.3 35 82.9
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 1.9e-08 64.3 35 82.9
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 5.6e-08 62.8 47 66.0
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 1.6e-07 61.2 48 66.7
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 2.4e-06 57.4 76 50.0


User provided reference genes

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