Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 6.3e-100 367.5 189 100.0
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 1.8e-70 269.6 158 86.1
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.4e-67 259.2 155 85.8
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 6.0e-66 254.6 158 82.3
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 8.9e-62 240.7 173 74.6
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 2.6e-61 239.2 165 75.8
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.9e-60 235.7 172 72.7
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 6.4e-60 234.6 182 71.4
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 1.5e-56 223.4 140 82.1
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 5.6e-56 221.5 144 81.2
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 1.1e-54 217.2 134 82.8
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 1.1e-54 217.2 151 71.5
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 3.1e-54 215.7 162 67.9
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 6.8e-54 214.5 158 69.0
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 6.8e-54 214.5 178 64.0
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 3.4e-53 212.2 172 64.0
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 5.8e-53 211.5 182 62.1
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 7.5e-53 211.1 188 59.0
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 9.9e-53 210.7 164 67.1
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 9.9e-53 210.7 159 68.6
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 1.7e-52 209.9 172 65.7
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.7e-52 209.9 182 62.1
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 4.9e-52 208.4 171 63.7
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 6.4e-52 208.0 157 65.6
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 6.4e-52 208.0 181 60.8
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 8.3e-52 207.6 170 62.4
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 3.2e-51 205.7 182 61.5
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 3.2e-51 205.7 190 59.5
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 4.1e-51 205.3 190 61.1
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 5.4e-51 204.9 153 68.6
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 7.1e-51 204.5 188 59.0
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 9.2e-51 204.1 159 66.0
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 1.2e-50 203.8 170 59.4
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 1.6e-50 203.4 152 69.1
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 1.6e-50 203.4 152 69.7
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 2.7e-50 202.6 162 63.0
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 3.5e-50 202.2 159 65.4
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 4.6e-50 201.8 155 65.8
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 1.3e-49 200.3 175 60.6
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.7e-49 199.9 181 58.0
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 3.0e-49 199.1 151 68.2
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 3.9e-49 198.7 170 59.4
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 5.1e-49 198.4 164 61.0
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 5.1e-49 198.4 170 59.4
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 5.1e-49 198.4 165 61.2
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 6.6e-49 198.0 150 64.7
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 6.6e-49 198.0 158 63.9
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.6e-49 198.0 158 63.9
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.6e-49 198.0 158 63.9
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 6.6e-49 198.0 188 58.0
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 6.6e-49 198.0 143 71.3
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 1.1e-48 197.2 164 63.4
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.5e-48 196.8 159 62.9
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.5e-48 196.8 181 60.2
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.5e-48 196.8 181 62.4
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.9e-48 196.4 187 59.4
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.5e-48 196.1 181 57.5
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 2.5e-48 196.1 159 62.9
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.3e-48 195.7 165 66.1
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 5.6e-48 194.9 165 59.4
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 7.3e-48 194.5 178 57.3
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 1.6e-47 193.4 188 57.4
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.6e-47 193.4 154 62.3
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 2.1e-47 193.0 182 58.8
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 4.7e-47 191.8 164 63.4
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 6.2e-47 191.4 144 66.7
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.1e-46 190.7 202 54.0
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 1.1e-46 190.7 188 55.3
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 1.4e-46 190.3 133 72.2
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 2.4e-46 189.5 146 64.4
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 2.4e-46 189.5 146 64.4
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 2.4e-46 189.5 146 64.4
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 2.4e-46 189.5 146 64.4
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 2.4e-46 189.5 183 54.1
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 4.0e-46 188.7 145 66.2
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 5.2e-46 188.3 158 62.0
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 5.2e-46 188.3 202 53.5
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 8.9e-46 187.6 146 63.7
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.2e-45 187.2 150 64.0
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 1.5e-45 186.8 184 56.0
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 2.0e-45 186.4 191 52.9
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 2.6e-45 186.0 158 61.4
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 3.4e-45 185.7 160 56.9
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 3.4e-45 185.7 150 64.0
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 4.4e-45 185.3 159 60.4
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 4.4e-45 185.3 159 60.4
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 1.7e-44 183.3 179 53.1
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 2.2e-44 183.0 132 69.7
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 3.8e-44 182.2 132 68.2
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 4.9e-44 181.8 154 59.7
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 1.9e-43 179.9 190 51.6
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.4e-43 179.5 132 67.4
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.4e-43 179.5 159 57.2
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 4.2e-43 178.7 159 56.0
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 4.2e-43 178.7 181 53.6
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 7.1e-43 177.9 142 64.1
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 9.2e-43 177.6 154 60.4
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.6e-42 176.8 134 66.4
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 7.8e-42 174.5 135 65.9
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.0e-41 174.1 164 58.5
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.3e-41 173.7 145 60.0
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 1.7e-41 173.3 150 62.7
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 5.1e-41 171.8 157 59.9
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 5.1e-41 171.8 151 57.6
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 1.1e-40 170.6 190 51.6
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 1.1e-40 170.6 190 51.6
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.5e-40 169.5 130 65.4
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 2.5e-40 169.5 164 58.5
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 4.3e-40 168.7 132 64.4
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 4.3e-40 168.7 132 64.4
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 2.1e-39 166.4 164 57.3
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 5.3e-38 161.8 172 50.6
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 6.9e-38 161.4 145 59.3
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 6.9e-38 161.4 129 63.6
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.5e-37 160.2 196 45.9
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 1.7e-36 156.8 183 50.3
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 6.4e-36 154.8 132 65.2
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 6.4e-36 154.8 134 58.2
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.4e-35 153.7 164 51.2
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 1.9e-35 153.3 136 59.6
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 4.2e-35 152.1 132 58.3
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 1.2e-34 150.6 155 53.5
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 1.0e-33 147.5 192 44.8
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.7e-33 144.4 130 60.0
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.6e-31 139.0 181 47.0
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.1e-30 137.5 104 65.4
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 9.9e-29 131.0 139 51.8
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 3.8e-28 129.0 144 50.7
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 8.4e-28 127.9 100 67.0
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 1.6e-26 123.6 132 46.2
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 8.7e-25 117.9 165 43.0
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 2.8e-23 112.8 143 46.2
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 2.4e-22 109.8 129 48.1
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 7.1e-19 98.2 88 55.7
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 3.9e-17 92.4 138 39.9
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 3.9e-17 92.4 100 56.0
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 1.9e-16 90.1 117 42.7
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 1.3e-15 87.4 135 35.6
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 3.1e-14 82.8 82 57.3
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 2.6e-13 79.7 113 39.8
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 7.1e-11 71.6 142 32.4
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 1.8e-09 67.0 57 57.9
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.9e-08 63.5 136 31.6
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 2.8e-07 59.7 84 39.3


User provided reference genes

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