Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 5.2e-232 807.4 414 100.0
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.4e-192 676.4 418 84.4
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.5e-183 644.8 419 81.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.8e-152 543.1 425 70.6
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 3.1e-152 542.3 425 71.1
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.0e-147 527.3 426 67.1
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.5e-142 508.1 393 66.2
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-139 500.0 425 64.7
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.6e-138 496.1 425 65.6
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 5.9e-135 485.0 394 65.2
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 6.6e-134 481.5 335 77.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 4.0e-131 472.2 424 62.0
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.7e-126 456.8 424 61.1
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.9e-126 455.7 427 59.7
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.9e-126 455.7 427 59.7
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.1e-124 449.9 434 57.8
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.8e-124 449.5 421 59.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 4.0e-123 445.7 420 58.6
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 8.9e-123 444.5 423 58.2
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 4.4e-122 442.2 422 57.6
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-121 440.3 423 57.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 6.0e-119 431.8 430 56.5
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.1e-115 421.0 423 54.8
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 7.1e-112 408.3 423 53.4
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 7.8e-111 404.8 419 53.2
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.7e-110 403.7 421 53.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 3.9e-110 402.5 422 53.6
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 2.8e-108 396.4 395 57.5
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 2.7e-103 379.8 422 51.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 3.9e-102 375.9 435 49.9
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 3.6e-100 369.4 422 49.5
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 8.1e-100 368.2 438 48.9
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.4e-99 367.5 423 49.4
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 6.9e-99 365.2 418 51.0
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 9.9e-98 361.3 434 49.8
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.3e-97 360.9 428 50.7
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.1e-96 357.8 424 48.3
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-96 357.1 423 49.4
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 6.0e-95 352.1 426 48.1
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 7.3e-93 345.1 419 46.8
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.3e-92 344.4 436 47.9
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.8e-91 340.5 423 48.5
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.8e-91 340.5 428 47.4
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 5.3e-91 339.0 434 45.9
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.6e-90 336.7 422 45.5
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 8.4e-89 331.6 437 46.5
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.4e-88 330.1 430 47.7
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 5.4e-88 328.9 432 45.8
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 9.3e-88 328.2 430 45.3
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.2e-87 327.8 424 47.6
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.6e-87 327.4 430 47.0
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.6e-87 327.4 424 47.4
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.1e-87 327.0 430 47.2
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 3.0e-86 323.2 424 45.0
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.9e-85 320.5 440 43.2
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.3e-85 319.3 424 47.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 7.4e-85 318.5 424 47.9
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 9.6e-85 318.2 350 52.6
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.3e-84 317.8 395 46.8
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.8e-84 316.6 330 53.6
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 4.8e-84 315.8 424 47.4
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 6.2e-84 315.5 428 47.4
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.4e-83 314.3 424 47.6
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-83 313.2 424 47.4
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.0e-83 312.8 424 47.9
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 6.9e-83 312.0 424 46.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 5.8e-82 308.9 449 42.1
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.2e-81 307.0 423 45.2
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.1e-80 304.7 422 42.2
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.7e-79 300.1 437 42.3
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 4.6e-79 299.3 436 41.1
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 4.6e-79 299.3 423 40.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.0e-78 298.1 442 42.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.8e-78 297.4 436 40.6
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 5.1e-78 295.8 400 45.8
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 6.7e-78 295.4 430 41.6
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 4.8e-76 289.3 425 44.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.4e-75 287.0 448 39.1
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 6.9e-75 285.4 357 47.3
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.5e-74 284.3 425 41.4
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.5e-74 284.3 426 42.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.4e-74 283.1 311 50.2
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 5.8e-74 282.3 427 42.9
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 4.9e-73 279.3 434 40.3
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.1e-72 278.1 433 43.4
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.4e-72 277.7 336 49.1
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.6e-71 272.7 377 44.0
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 4.6e-71 272.7 442 40.7
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 6.0e-71 272.3 427 42.2
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.3e-70 270.4 431 38.1
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.9e-69 267.3 433 37.9
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 2.5e-69 266.9 482 38.8
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.3e-69 266.5 426 40.4
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 4.8e-68 262.7 433 37.6
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.8e-68 262.7 423 40.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 2.2e-65 253.8 431 37.8
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 2.9e-65 253.4 451 38.1
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.8e-65 253.1 427 38.4
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.1e-64 251.5 400 39.5
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.4e-64 251.1 355 42.3
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 7.2e-64 248.8 428 38.1
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 9.3e-64 248.4 453 38.6
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.0e-62 245.0 427 37.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.8e-62 244.2 427 37.7
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 5.7e-61 239.2 387 39.0
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 5.7e-61 239.2 400 39.2
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-60 238.0 428 36.4
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 3.7e-60 236.5 387 38.5
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.7e-60 236.5 428 36.2
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.4e-59 234.6 409 37.7
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.4e-59 233.8 356 40.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.1e-59 233.0 371 42.6
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 3.4e-58 229.9 216 56.5
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 4.5e-58 229.6 435 36.8
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.4e-56 224.6 425 34.6
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.9e-56 224.2 427 35.4
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 5.5e-56 222.6 428 36.7
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.8e-54 217.6 424 36.1
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 6.3e-52 209.1 270 44.1
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.1e-51 208.4 402 37.6
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.2e-49 200.7 270 43.0
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.9e-49 200.3 423 36.4
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.1e-48 198.4 419 35.1
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.5e-48 197.2 353 37.4
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.7e-47 193.7 384 35.2
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 5.3e-43 179.5 421 32.3
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.2e-42 178.3 378 34.4
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 3.5e-42 176.8 244 41.8
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.3e-41 174.9 244 42.2
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 6.1e-39 166.0 218 46.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.8e-38 164.5 170 54.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 6.7e-38 162.5 227 40.1
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 9.7e-37 158.7 200 46.5
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 5.0e-33 146.4 216 42.6
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.1e-32 145.2 295 36.9
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.6e-29 134.0 174 45.4
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 4.4e-29 133.3 168 46.4
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 9.8e-29 132.1 174 44.8
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 9.8e-29 132.1 174 44.8
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 6.3e-28 129.4 165 46.1
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 4.5e-26 123.2 425 27.8
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 1.0e-25 122.1 118 56.8
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 4.7e-23 113.2 85 67.1
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 1.7e-20 104.8 176 40.9
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.7e-20 104.8 128 48.4
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 2.2e-20 104.4 89 59.6
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.1e-19 100.1 66 72.7
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-17 94.7 61 78.7
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.9e-16 91.3 390 24.9
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.2e-13 82.0 140 37.1
arahy.Tifrunner.gnm1.ann1.Z8WERX Arachis hypogaea HOM05D004053 ORTHO05D005065 2.9e-12 77.4 57 64.9
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 4.9e-12 76.6 70 52.9
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 4.9e-12 76.6 70 52.9
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 8.3e-12 75.9 62 56.5
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.8e-11 74.7 93 44.1
arahy.Tifrunner.gnm1.ann1.QFAY72 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-10 71.6 58 60.3
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 7.8e-10 69.3 67 52.2
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 7.8e-10 69.3 67 52.2
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 7.8e-10 69.3 67 52.2
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 5.0e-09 66.6 83 39.8
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 5.6e-08 63.2 54 57.4
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 2.1e-07 61.2 50 56.0
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 4.7e-07 60.1 130 33.8
AagrBONN_evm.TU.Sc2ySwM_117.315 Anthoceros agrestis HOM05D049954 ORTHO05D005065 5.2e-06 56.6 180 26.7


User provided reference genes

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