Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g088440 Medicago truncatula HOM05D000001 ORTHO05D265087 2.3e-34 148.3 73 100.0
Ca_10332_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.5e-12 75.9 52 75.0
Glyma.10G018100 Glycine max HOM05D000001 ORTHO05D000003 5.6e-12 73.9 52 69.2
Psat6g165360 Pisum sativum HOM05D000001 ORTHO05D000003 1.2e-11 72.8 52 69.2
Lalb_Chr02g0146371 Lupinus albus HOM05D000001 ORTHO05D000003 2.1e-11 72.0 52 67.3
arahy.Tifrunner.gnm1.ann1.QBM4VB Arachis hypogaea HOM05D000001 ORTHO05D000003 2.8e-11 71.6 52 67.3
arahy.Tifrunner.gnm1.ann1.H6V2K6 Arachis hypogaea HOM05D000001 ORTHO05D000003 3.6e-11 71.2 52 67.3
Haze_06546 Corylus avellana HOM05D000001 ORTHO05D000003 6.8e-10 67.0 64 54.7
QL12p028434 Quercus lobata HOM05D000001 ORTHO05D000003 6.8e-10 67.0 61 57.4
TWI23G0584 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.5e-09 65.9 52 59.6
Prupe.8G261800 Prunus persica HOM05D000001 ORTHO05D000003 5.8e-09 63.9 52 57.7
COL.COLO4_23342 Corchorus olitorius HOM05D000001 ORTHO05D000003 7.5e-09 63.5 52 55.8
FvH4_2g25760 Fragaria vesca HOM05D000001 ORTHO05D000003 9.8e-09 63.2 61 50.8
FAN24G3412 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.8e-09 63.2 61 50.8
FAN20G2858 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-08 62.8 61 50.8
GSVIVG01028022001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.3e-08 62.8 52 63.5
TAR362G1342 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.9e-08 60.8 61 54.1
FAN15G1657 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.4e-08 60.5 61 49.2
MD11G1309500 Malus domestica HOM05D000001 ORTHO05D000003 1.9e-07 58.9 52 53.8
RcHm_v2.0_Chr6g0294061 Rosa chinensis HOM05D000001 ORTHO05D000003 1.9e-07 58.9 52 55.8
AL5G45660 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 3.2e-07 58.2 52 48.1
AT3G62890 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 3.2e-07 58.2 52 48.1
Carub.0005s2953 Capsella rubella HOM05D000001 ORTHO05D000003 3.2e-07 58.2 52 48.1
Nn3g21503 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.1e-07 57.8 52 53.8
Thhalv10006495m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 7.0e-07 57.0 52 48.1
Sp5g00630 Schrenkiella parvula HOM05D000001 ORTHO05D000003 7.0e-07 57.0 52 46.2
BcaB02g07314 Brassica carinata HOM05D000001 ORTHO05D000003 9.2e-07 56.6 52 46.2
CARHR173150 Cardamine hirsuta HOM05D000001 ORTHO05D024829 9.2e-07 56.6 52 48.1
Eucgr.K03486 Eucalyptus grandis HOM05D000001 ORTHO05D000003 9.2e-07 56.6 52 46.2
Lj1C24G18 Lonicera japonica HOM05D000001 ORTHO05D000003 9.2e-07 56.6 52 57.7
THA.LOC104798826 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.6e-06 55.8 52 48.1
THA.LOC104798828 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.6e-06 55.8 52 48.1
THA.LOC104827697 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.6e-06 55.8 52 48.1
BcaC08g45243 Brassica carinata HOM05D000001 ORTHO05D000003 2.0e-06 55.5 52 44.2
C06p28430 Brassica napus HOM05D000001 ORTHO05D000003 2.0e-06 55.5 52 44.2
BolC6t38012H Brassica oleracea HOM05D000001 ORTHO05D000003 2.0e-06 55.5 52 44.2
PSO170G1918 Papaver somniferum HOM05D000001 ORTHO05D000003 2.0e-06 55.5 49 55.1
Aa31LG10G16500 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.7e-06 55.1 52 46.2
Aqoxy3G01237 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.7e-06 55.1 49 55.1
Cfa012686 Carpinus fangiana HOM05D000001 ORTHO05D000003 3.5e-06 54.7 61 42.6
Actinidia19361 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.6e-06 54.3 49 53.1
CSS0018220 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 4.6e-06 54.3 64 43.8
MBI12_g22451_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004533 4.6e-06 54.3 49 53.1
Rhsim11G0098000 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.6e-06 54.3 49 51.0
Dinv19687 Davidia involucrata HOM05D000001 ORTHO05D000003 6.0e-06 53.9 52 50.0
Lalb_Chr08g0244701 Lupinus albus HOM05D000001 ORTHO05D000003 6.0e-06 53.9 61 44.3
AT5G06540 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 7.8e-06 53.5 61 45.9
Cpa.g.sc17.63 Carica papaya HOM05D000001 ORTHO05D000003 7.8e-06 53.5 64 40.6
PSO017G1752 Papaver somniferum HOM05D000001 ORTHO05D000003 7.8e-06 53.5 49 49.0
PSO478G2950 Papaver somniferum HOM05D000001 ORTHO05D000003 7.8e-06 53.5 49 49.0
vmacro19010 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 7.8e-06 53.5 49 55.1


User provided reference genes

Program Settings