Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 3.4e-231 804.7 420 100.0
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 2.7e-191 672.2 436 83.9
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 6.2e-172 607.8 369 87.0
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 4.6e-159 565.1 428 76.2
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 7.3e-157 557.8 444 72.3
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 4.1e-152 542.0 445 70.8
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 9.0e-147 524.2 443 70.7
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.2e-146 523.9 454 68.9
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.5e-146 523.5 433 69.7
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.1e-143 513.1 510 62.2
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 4.8e-132 475.3 384 70.3
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 3.8e-129 465.7 317 79.5
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.2e-122 444.1 452 58.4
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 7.1e-120 434.9 455 57.6
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 1.3e-118 430.6 457 58.2
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 6.7e-118 428.3 449 56.8
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.3e-116 424.1 454 57.3
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-112 410.6 314 72.3
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 4.2e-112 409.1 451 57.0
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 9.3e-112 407.9 454 55.7
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.6e-111 405.6 446 54.9
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 5.1e-110 402.1 453 54.3
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 8.8e-110 401.4 450 54.9
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 7.4e-109 398.3 455 54.3
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 4.8e-108 395.6 431 55.7
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 6.3e-108 395.2 437 56.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.0e-105 387.9 444 55.2
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.8e-105 386.0 450 52.7
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.2e-103 380.9 433 55.2
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 4.7e-103 379.0 441 52.6
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 4.7e-103 379.0 429 54.3
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 6.1e-103 378.6 439 54.9
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.8e-102 377.1 450 53.6
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 3.1e-99 366.3 447 52.8
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 3.1e-99 366.3 445 53.0
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 4.1e-99 365.9 464 49.6
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 9.1e-99 364.8 463 49.0
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 1.5e-98 364.0 437 53.1
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.7e-97 360.5 428 55.8
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.8e-97 359.4 436 52.3
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 5.0e-97 359.0 437 52.6
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 6.5e-97 358.6 467 48.4
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 2.5e-96 356.7 449 51.4
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 7.2e-96 355.1 348 59.2
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 9.4e-96 354.8 464 48.9
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.6e-95 354.0 388 55.7
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.6e-95 354.0 189 94.2
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.7e-95 353.2 434 52.1
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.7e-95 353.2 472 48.9
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 4.7e-95 352.4 435 52.6
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 8.0e-95 351.7 435 52.0
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 8.0e-95 351.7 464 48.3
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 8.8e-94 348.2 448 51.1
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 2.8e-92 343.2 464 48.9
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 2.8e-92 343.2 425 52.2
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 3.5e-90 336.3 435 50.1
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.0e-89 334.7 456 48.2
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.7e-89 334.0 432 50.9
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.2e-89 333.6 333 58.6
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 6.5e-89 332.0 439 48.5
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 6.5e-89 332.0 454 50.7
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 3.2e-88 329.7 473 47.4
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.2e-87 327.8 444 50.0
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.8e-86 323.9 431 48.0
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.3e-86 323.6 289 65.7
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.8e-86 321.6 434 49.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.5e-85 320.9 443 49.4
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 2.6e-85 320.1 469 46.1
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.6e-85 320.1 418 51.0
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 9.7e-85 318.2 434 49.1
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.3e-84 317.8 289 62.6
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-84 317.8 492 44.9
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.2e-84 317.0 440 46.1
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 8.2e-84 315.1 288 64.9
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.5e-82 309.3 429 48.5
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 4.5e-82 309.3 483 46.4
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.5e-80 304.3 434 47.5
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.2e-80 302.0 331 54.1
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-79 301.2 325 56.3
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.6e-79 300.8 471 43.5
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 6.1e-79 298.9 367 49.3
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 8.0e-79 298.5 429 44.5
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.4e-78 297.7 438 46.6
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 6.8e-78 295.4 408 49.0
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.2e-77 294.7 342 52.0
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.2e-77 294.7 330 52.4
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 2.6e-77 293.5 367 48.8
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 5.7e-77 292.4 331 53.5
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 5.9e-74 282.3 464 42.9
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.3e-73 281.2 265 61.5
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 3.8e-73 279.6 337 49.3
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 8.6e-73 278.5 268 60.8
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.1e-72 278.1 596 35.6
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 3.3e-72 276.6 425 46.8
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 2.8e-71 273.5 287 58.5
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.4e-70 271.2 462 42.6
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.3e-70 270.4 346 48.8
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 6.8e-70 268.9 419 42.5
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 8.9e-70 268.5 217 66.8
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.0e-69 267.3 264 61.4
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.4e-69 266.5 238 62.2
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 7.5e-69 265.4 334 50.3
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 7.5e-69 265.4 446 44.6
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.3e-68 264.6 307 53.7
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.2e-68 263.8 308 52.9
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.1e-67 261.5 320 52.2
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 1.8e-67 260.8 314 53.5
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 1.2e-66 258.1 282 56.7
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 7.8e-66 255.4 280 56.1
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 7.8e-66 255.4 280 56.1
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 5.6e-64 249.2 288 55.2
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.1e-63 245.7 338 47.3
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 4.0e-62 243.0 296 52.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 6.4e-60 235.7 266 54.9
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.6e-55 221.1 314 47.8
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 3.7e-52 209.9 251 48.6
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-50 203.8 308 42.9
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 8.6e-49 198.7 422 37.4
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.5e-45 188.0 277 45.8
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.6e-45 187.2 191 56.5
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 3.4e-45 186.8 204 50.5
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.3e-44 184.9 274 45.6
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 4.3e-40 169.9 161 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.2e-39 168.3 451 34.4
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.8e-38 164.5 381 37.5
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 1.2e-37 161.8 423 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.5e-37 161.4 478 35.1
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 1.3e-36 158.3 154 59.7
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 6.4e-36 156.0 138 63.8
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 3.5e-34 150.2 123 68.3
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.9e-32 144.4 98 74.5
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.5e-32 144.1 225 43.1
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 8.1e-31 139.0 231 41.1
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 1.4e-30 138.3 218 42.7
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.8e-30 137.9 145 57.2
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.8e-28 130.2 137 53.3
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 3.8e-28 130.2 234 41.5
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 8.4e-28 129.0 211 41.7
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 9.3e-27 125.6 69 82.6
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.1e-26 124.4 71 78.9
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 2.1e-26 124.4 82 79.3
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 7.8e-26 122.5 71 77.5
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.9e-25 120.2 70 81.4
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.5e-24 117.5 115 54.8
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 3.3e-24 117.1 105 64.8
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.8e-23 114.0 97 58.8
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 4.0e-22 110.2 202 36.6
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 4.9e-20 103.2 248 37.1
Medtr7g108090 Medicago truncatula HOM05D004030 ORTHO05D004952 1.9e-19 101.3 100 66.0
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 3.5e-18 97.1 88 53.4
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.0e-17 94.0 260 35.4
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.5e-16 90.9 234 35.0
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.3e-16 90.5 241 32.0
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 3.3e-16 90.5 290 30.0
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.3e-16 90.1 241 32.0
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.3e-16 90.1 241 32.0
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.8e-15 86.7 256 30.5
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 2.4e-14 84.3 141 44.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.0e-14 83.6 101 48.5
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.0e-13 81.3 288 28.5
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 8.4e-12 75.9 99 36.4
SHI28534 Sapria himalayana HOM05D005377 ORTHO05D003034 2.4e-06 57.8 143 37.8
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.9e-06 56.2 72 47.2


User provided reference genes

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