Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 4.6e-103 377.9 186 100.0
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 6.2e-84 314.3 189 84.7
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 6.9e-67 257.7 188 75.0
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 4.5e-66 255.0 189 69.8
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.4e-64 250.0 192 68.8
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.1e-63 246.1 190 67.9
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 3.7e-60 235.3 188 67.0
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 3.1e-59 232.3 192 67.2
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 7.7e-58 227.6 188 63.3
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.1e-47 193.0 192 54.7
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 6.7e-46 188.0 191 57.1
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 7.4e-45 184.5 193 55.4
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.8e-43 179.9 192 56.8
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.0e-42 176.4 182 54.9
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.5e-42 175.6 198 55.1
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.5e-40 170.2 190 54.2
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.9e-40 169.9 182 52.7
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.2e-40 168.7 194 47.9
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.2e-40 168.7 189 53.4
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 7.2e-40 167.9 190 53.7
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-40 167.9 180 56.1
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 9.4e-40 167.5 200 51.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.1e-39 166.4 193 52.3
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.1e-39 166.4 189 52.9
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 6.1e-39 164.9 189 52.4
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.0e-39 164.5 180 54.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 8.0e-39 164.5 185 51.9
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 8.8e-38 161.0 184 50.5
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.2e-37 160.6 206 47.6
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.2e-37 160.6 193 50.8
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.5e-37 160.2 187 51.3
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.0e-37 159.8 195 47.7
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.4e-37 158.7 198 50.5
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 7.5e-37 157.9 187 48.1
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 9.7e-37 157.5 190 53.7
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-36 157.1 188 48.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.7e-36 156.8 184 51.1
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.8e-36 156.0 183 51.9
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.8e-36 156.0 190 53.2
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.8e-36 156.0 186 50.5
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-36 155.6 186 50.0
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.7e-36 155.6 184 51.6
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.7e-36 155.6 190 48.4
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.7e-36 155.6 184 47.8
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.8e-35 153.3 182 52.2
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 2.4e-35 152.9 199 51.3
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.4e-35 152.9 198 49.5
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.4e-35 152.9 199 51.3
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.4e-35 152.9 199 51.3
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.1e-35 152.5 174 47.7
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 5.3e-35 151.8 179 49.2
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 7.0e-35 151.4 194 47.9
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 7.0e-35 151.4 182 52.2
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.1e-35 151.0 193 49.2
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.2e-34 150.6 173 52.0
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.2e-34 150.6 196 47.4
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.6e-34 150.2 173 52.6
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.6e-34 150.2 181 51.4
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.0e-34 149.8 173 53.2
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-34 149.8 189 48.7
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.5e-34 148.7 191 48.7
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 4.5e-34 148.7 172 51.7
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 4.5e-34 148.7 187 48.1
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 5.9e-34 148.3 191 47.1
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.9e-34 148.3 187 48.1
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.7e-34 147.9 195 46.2
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 7.7e-34 147.9 194 46.9
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.3e-33 147.1 176 52.8
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.7e-33 146.7 180 47.2
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.9e-33 146.0 185 50.3
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 3.8e-33 145.6 171 48.5
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 8.5e-33 144.4 175 46.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 8.5e-33 144.4 200 49.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-32 144.1 200 46.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.9e-32 143.3 187 46.0
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.5e-32 142.9 184 48.9
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.5e-32 142.9 192 45.3
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 2.5e-32 142.9 184 48.4
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 3.2e-32 142.5 194 49.5
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 4.2e-32 142.1 190 45.3
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 9.4e-32 141.0 173 49.1
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 8.0e-31 137.9 174 52.9
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 8.0e-31 137.9 174 50.0
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 8.0e-31 137.9 179 45.3
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 8.0e-31 137.9 177 49.2
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-30 137.5 171 48.5
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-30 137.1 184 47.3
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.8e-30 136.7 176 44.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 6.8e-30 134.8 172 48.8
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 6.8e-30 134.8 168 48.2
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 8.8e-30 134.4 174 49.4
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 8.8e-30 134.4 174 49.4
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-29 134.0 200 46.0
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.5e-29 133.7 174 48.3
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.6e-29 132.9 176 46.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.5e-29 131.3 188 45.2
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.5e-29 131.3 195 47.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 9.8e-29 131.0 174 48.9
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.3e-28 130.6 208 44.2
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.7e-28 129.0 181 45.3
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 4.8e-28 128.6 178 46.1
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 8.3e-28 127.9 179 45.3
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 8.3e-28 127.9 179 45.3
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 8.3e-28 127.9 187 48.1
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.1e-27 127.5 174 47.1
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.4e-27 127.1 195 44.1
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.8e-27 126.7 172 46.5
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.4e-27 126.3 173 46.8
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 2.4e-27 126.3 183 48.6
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 3.1e-27 125.9 179 44.7
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 3.1e-27 125.9 179 44.7
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-27 125.9 179 44.7
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.4e-27 125.2 179 45.3
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 7.0e-27 124.8 220 42.7
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 9.1e-27 124.4 170 47.1
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.2e-26 124.0 170 47.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.2e-26 124.0 185 45.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.6e-26 123.6 178 43.3
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.0e-26 123.2 173 45.7
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.7e-26 122.9 171 46.2
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 7.7e-26 121.3 181 39.8
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-24 117.5 161 46.0
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.5e-24 117.1 175 44.0
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.9e-24 116.7 180 43.3
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 2.5e-24 116.3 180 44.4
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.3e-24 115.9 180 44.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 4.2e-24 115.5 159 46.5
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.2e-23 114.0 171 45.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 2.8e-23 112.8 180 40.6
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 6.1e-23 111.7 178 43.3
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 8.0e-23 111.3 175 43.4
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 8.0e-23 111.3 177 43.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 8.0e-23 111.3 177 43.5
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 8.0e-23 111.3 177 43.5
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 8.0e-23 111.3 177 43.5
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.4e-22 110.5 183 43.2
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.4e-22 110.5 169 46.2
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.8e-22 110.2 179 43.0
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.3e-22 109.8 177 43.5
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-22 109.4 148 48.6
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 7.5e-21 104.8 125 44.8
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.8e-21 104.4 173 42.8
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.7e-20 103.6 176 42.0
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 2.2e-20 103.2 177 42.9
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.9e-20 102.1 175 39.4
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 2.4e-19 99.8 220 39.5
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.1e-19 99.4 175 38.9
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 2.7e-18 96.3 168 38.7
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.9e-17 92.8 166 41.6
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.9e-17 92.4 166 40.4
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.9e-17 92.4 106 48.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.2e-15 87.4 171 40.4
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 4.7e-15 85.5 169 40.2
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.0e-15 84.7 94 50.0
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.8e-14 83.6 150 42.7
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.8e-14 83.6 154 39.6
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.1e-14 82.8 111 45.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.2e-14 82.0 122 44.3
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 3.4e-13 79.3 226 35.0
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 5.8e-13 78.6 172 39.5
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-12 77.4 121 43.0
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.7e-12 77.0 204 37.3
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.9e-12 75.5 129 39.5
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.9e-11 73.6 186 32.3
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.2e-11 72.8 199 31.7
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 5.4e-11 72.0 105 40.0
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 6.0e-10 68.6 217 33.6
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.3e-09 67.4 169 35.5
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-09 67.0 68 57.4
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 6.6e-09 65.1 77 50.6
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.1e-08 64.3 149 37.6
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 6.2e-07 58.5 157 26.1
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 6.2e-07 58.5 174 31.0
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 1.8e-06 57.0 172 27.9
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.8e-06 57.0 207 27.1
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 3.1e-06 56.2 190 28.9


User provided reference genes

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