Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 2.9e-108 395.2 193 100.0
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 1.6e-90 336.3 196 84.2
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 3.9e-89 331.6 193 86.0
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 6.7e-89 330.9 197 82.7
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 6.7e-89 330.9 197 82.7
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 2.3e-73 279.3 188 69.1
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.5e-72 276.6 193 67.4
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 5.9e-69 264.6 201 66.7
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 1.9e-67 259.6 201 64.2
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 4.1e-62 241.9 197 60.4
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 1.5e-61 240.0 189 62.4
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 4.5e-61 238.4 194 61.9
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 7.7e-61 237.7 194 61.9
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 6.5e-60 234.6 197 61.9
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.2e-58 230.3 193 58.0
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 3.0e-57 225.7 195 60.0
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 3.9e-57 225.3 197 56.9
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 5.2e-57 224.9 197 59.4
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 1.1e-56 223.8 197 58.9
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 2.0e-56 223.0 192 57.3
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 2.6e-56 222.6 199 60.3
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 3.7e-55 218.8 203 57.6
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 4.8e-55 218.4 197 57.9
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 5.3e-54 214.9 197 56.9
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 9.1e-54 214.2 197 56.3
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.5e-53 211.8 199 57.3
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 1.0e-52 210.7 199 54.8
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 3.8e-52 208.8 199 55.8
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 6.5e-52 208.0 199 55.8
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 1.9e-51 206.5 199 57.8
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 5.5e-51 204.9 194 52.1
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 7.2e-51 204.5 197 53.3
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 1.6e-50 203.4 194 55.7
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 2.7e-50 202.6 192 54.7
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 8.0e-50 201.1 196 56.1
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 1.4e-49 200.3 196 55.1
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 6.8e-49 198.0 195 51.3
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 2.6e-48 196.1 191 52.9
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 4.4e-48 195.3 189 52.9
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 7.5e-48 194.5 196 51.5
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.3e-47 193.7 199 52.8
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 1.7e-47 193.4 198 54.0
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 2.8e-47 192.6 195 53.8
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 4.8e-47 191.8 193 52.3
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 6.3e-47 191.4 187 52.9
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 6.3e-47 191.4 187 52.9
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 6.3e-47 191.4 195 52.3
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 5.3e-46 188.3 186 53.8
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 7.0e-46 188.0 198 52.0
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 9.1e-46 187.6 192 52.1
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 2.0e-45 186.4 195 48.7
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 3.5e-45 185.7 199 52.8
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 1.3e-44 183.7 189 52.4
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 1.7e-44 183.3 199 51.3
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 1.7e-44 183.3 200 51.5
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 1.7e-44 183.3 200 50.5
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 1.7e-44 183.3 204 48.0
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 3.8e-44 182.2 174 56.9
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 5.0e-44 181.8 211 44.5
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 8.5e-44 181.0 203 50.2
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 8.5e-44 181.0 203 50.2
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 8.5e-44 181.0 203 50.2
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 1.1e-43 180.6 202 50.0
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 1.1e-43 180.6 186 51.1
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 1.5e-43 180.3 199 50.8
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 1.9e-43 179.9 195 48.2
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.5e-43 179.5 196 52.0
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 5.5e-43 178.3 198 47.0
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 5.5e-43 178.3 203 46.3
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 7.2e-43 177.9 203 46.3
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 9.4e-43 177.6 209 48.3
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.2e-42 177.2 204 45.1
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.7e-42 176.0 196 50.5
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 2.7e-42 176.0 198 50.0
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 4.7e-42 175.3 196 51.0
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 6.1e-42 174.9 194 50.0
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 1.8e-41 173.3 203 48.8
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.8e-41 173.3 196 50.5
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 1.8e-41 173.3 196 50.5
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.8e-41 173.3 196 50.5
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 2.0e-40 169.9 194 51.0
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.6e-40 169.5 178 48.3
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 3.4e-40 169.1 162 54.3
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 5.7e-40 168.3 204 47.5
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.7e-40 168.3 199 48.2
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.7e-40 168.3 193 50.3
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 5.7e-40 168.3 193 50.3
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 9.8e-40 167.5 202 44.1
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 2.2e-39 166.4 198 44.4
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 6.3e-39 164.9 193 48.2
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 4.1e-38 162.2 195 43.1
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 5.4e-38 161.8 203 47.8
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 1.6e-37 160.2 204 45.6
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 3.5e-37 159.1 196 48.5
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 7.7e-37 157.9 180 46.7
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 8.6e-36 154.5 197 41.6
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 1.9e-35 153.3 227 39.6
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 1.9e-35 153.3 199 43.7
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 3.3e-35 152.5 146 56.2
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 5.5e-35 151.8 191 44.5
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 5.5e-35 151.8 158 50.6
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 5.5e-35 151.8 158 50.6
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 3.6e-34 149.1 202 44.1
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 1.4e-33 147.1 187 46.5
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 1.4e-33 147.1 202 44.1
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 1.2e-32 144.1 189 43.9
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 4.4e-32 142.1 183 44.8
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 9.8e-32 141.0 196 42.3
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 3.6e-26 122.5 206 42.2
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 3.1e-25 119.4 210 36.7
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 1.2e-24 117.5 201 38.8
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 1.2e-24 117.5 215 41.4
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 9.8e-24 114.4 213 35.7
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 4.9e-23 112.1 213 35.2
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 4.9e-23 112.1 213 35.2
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 8.3e-23 111.3 217 37.8
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 2.4e-22 109.8 200 35.5
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 2.4e-22 109.8 221 34.8
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 3.2e-22 109.4 218 35.8
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 3.2e-22 109.4 208 35.1
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 2.0e-21 106.7 208 36.5
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 1.3e-20 104.0 222 34.2
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 2.3e-20 103.2 223 35.0
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 2.8e-18 96.3 210 33.8
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.1e-17 94.4 117 42.7
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 4.4e-16 89.0 196 33.2
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 5.8e-16 88.6 96 43.8
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 1.2e-13 80.9 190 33.7
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 1.5e-11 73.9 204 32.8
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.1e-09 67.8 186 29.6
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 2.3e-09 66.6 91 45.1
CDE06G0938 Ceratophyllum demersum HOM05D001935 ORTHO05D001700 6.8e-09 65.1 174 32.8
CiPaw.03G066100 Carya illinoinensis HOM05D001935 ORTHO05D001700 2.6e-08 63.2 186 29.6
DCAR_007278 Daucus carota HOM05D001935 ORTHO05D001700 4.4e-08 62.4 183 27.9
CANSAT78G1422 Cannabis sativa HOM05D001935 ORTHO05D001700 5.8e-08 62.0 193 27.5
Gohir.D07G079675 Gossypium hirsutum HOM05D001935 ORTHO05D001700 5.8e-08 62.0 189 26.5
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 7.6e-08 61.6 174 28.2
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 9.9e-08 61.2 170 28.8
Gohir.A07G075100 Gossypium hirsutum HOM05D001935 ORTHO05D001700 9.9e-08 61.2 190 27.4
Gorai.001G084400 Gossypium raimondii HOM05D001935 ORTHO05D001700 9.9e-08 61.2 189 26.5
Thecc.04G125800 Theobroma cacao HOM05D001935 ORTHO05D001700 1.3e-07 60.8 190 28.4
Actinidia36351 Actinidia chinensis HOM05D001935 ORTHO05D001700 2.2e-07 60.1 185 26.5
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 2.2e-07 60.1 189 27.5
QL02p049399 Quercus lobata HOM05D001935 ORTHO05D001700 3.7e-07 59.3 186 28.5
QL02p049248 Quercus lobata HOM05D001935 ORTHO05D001700 4.9e-07 58.9 186 28.5
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 6.4e-07 58.5 83 38.6
Duzib133G0729 Durio zibethinus HOM05D001935 ORTHO05D001700 6.4e-07 58.5 187 27.3
Peaxi162Scf39498g00005 Petunia axillaris HOM05D001935 ORTHO05D001700 6.4e-07 58.5 187 28.9
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.1e-06 57.8 190 26.8
PGSC0003DMG402030595 Solanum tuberosum HOM05D001935 ORTHO05D001700 1.1e-06 57.8 191 28.3
TWI31G0738 Tripterygium wilfordii HOM05D001935 ORTHO05D001700 1.4e-06 57.4 192 26.6
TWI79G0540 Tripterygium wilfordii HOM05D001935 ORTHO05D001700 1.9e-06 57.0 187 27.3
Sopen02g035810 Solanum pennellii HOM05D001935 ORTHO05D001700 3.2e-06 56.2 187 28.3
Cpa.g.sc170.5 Carica papaya HOM05D001935 ORTHO05D001700 4.1e-06 55.8 81 40.7
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 4.1e-06 55.8 180 25.6
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 5.4e-06 55.5 189 27.0
Ciclev10012926m.g Citrus clementina HOM05D001935 ORTHO05D001700 7.1e-06 55.1 187 27.8
Hma1.2p1_0283F.1_g113680 Hydrangea macrophylla HOM05D001935 ORTHO05D001700 7.1e-06 55.1 84 39.3
Lj2g0026095 Lotus japonicus HOM05D001935 ORTHO05D001700 9.2e-06 54.7 164 29.3


User provided reference genes

Program Settings