Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.4e-220 769.2 366 100.0
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.7e-197 691.4 359 90.0
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 5.7e-190 667.5 364 86.3
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.6e-187 658.7 364 84.6
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 1.5e-185 652.9 367 83.4
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 2.5e-185 652.1 369 84.0
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 5.5e-185 651.0 364 84.6
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.1e-184 649.0 362 84.8
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.7e-184 648.7 364 84.3
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 6.8e-167 590.9 369 75.6
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 8.3e-165 583.9 368 75.0
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 5.4e-164 581.3 368 75.0
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.2e-163 580.1 368 74.7
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 6.6e-162 574.3 366 73.5
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.9e-161 572.8 366 73.2
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 6.2e-160 567.8 368 72.0
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.2e-160 567.8 366 72.4
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 6.8e-159 564.3 366 72.1
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 8.9e-159 563.9 364 71.4
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 8.9e-159 563.9 367 69.5
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-158 562.8 366 71.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-158 562.8 366 71.9
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 4.4e-158 561.6 366 71.6
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.7e-157 558.5 359 71.3
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 3.7e-157 558.5 348 74.1
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 6.4e-157 557.8 366 71.6
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.1e-156 557.0 367 70.3
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 7.0e-156 554.3 360 70.0
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.2e-155 553.5 369 69.9
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.0e-155 552.7 367 70.0
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.6e-155 551.6 364 69.5
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 3.0e-154 548.9 346 72.3
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.9e-153 546.2 366 69.7
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 7.3e-153 544.3 370 68.6
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 2.1e-152 542.7 346 71.1
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 8.1e-152 540.8 353 70.5
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.1e-151 540.4 365 67.1
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.3e-151 539.3 362 69.3
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 5.2e-151 538.1 360 67.5
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 8.9e-151 537.3 360 67.5
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 8.9e-151 537.3 363 69.1
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 2.0e-150 536.2 367 67.3
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.0e-150 536.2 349 69.9
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.3e-149 533.5 347 71.5
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.7e-149 533.1 360 67.5
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.7e-149 533.1 360 67.8
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 3.7e-149 531.9 360 66.9
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 4.9e-149 531.6 360 66.4
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 6.4e-149 531.2 362 66.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.4e-148 530.0 360 66.4
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.4e-148 529.3 360 66.7
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.4e-148 529.3 360 66.7
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 3.2e-148 528.9 360 66.1
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 7.1e-148 527.7 367 68.1
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.2e-148 527.3 346 69.1
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 3.5e-147 525.4 360 66.7
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.0e-146 523.9 366 64.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 3.9e-146 521.9 317 75.4
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 5.1e-146 521.5 366 64.5
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 5.1e-146 521.5 360 66.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.5e-145 520.0 348 66.4
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 5.6e-145 518.1 335 70.4
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 2.1e-144 516.2 332 70.8
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.1e-144 516.2 360 65.0
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.8e-144 515.8 332 70.8
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-143 513.5 331 70.4
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.4e-143 513.5 360 64.7
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.3e-143 512.7 312 72.1
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 5.2e-143 511.5 357 67.5
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 5.2e-143 511.5 362 65.7
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-142 510.0 360 64.4
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 5.8e-142 508.1 358 66.8
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 7.6e-142 507.7 360 63.9
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.3e-141 506.9 345 64.6
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.1e-140 503.8 349 64.2
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.4e-140 503.4 364 62.4
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.9e-140 503.1 369 64.8
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.9e-140 503.1 370 64.3
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.9e-140 503.1 366 63.7
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.4e-140 501.5 367 65.1
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 5.4e-140 501.5 367 64.9
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 7.1e-140 501.1 364 62.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.2e-139 500.4 361 62.9
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 2.7e-139 499.2 372 62.9
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.6e-139 498.4 362 63.5
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.0e-138 495.7 369 63.7
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 6.6e-138 494.6 358 61.5
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 8.6e-138 494.2 366 61.7
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-137 493.4 370 59.5
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.9e-137 493.0 359 60.4
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 9.6e-137 490.7 358 60.6
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 2.8e-136 489.2 458 53.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.6e-136 488.8 364 64.6
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 4.7e-136 488.4 365 63.8
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 8.1e-136 487.6 364 64.3
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.3e-133 480.3 452 53.1
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.6e-131 473.4 367 59.9
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 2.1e-131 473.0 369 58.8
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.0e-130 469.2 414 56.0
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 6.6e-130 468.0 363 58.7
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.6e-128 463.4 358 62.6
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.1e-128 463.0 362 58.8
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.8e-128 462.6 339 62.8
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 3.1e-127 459.1 367 59.4
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 6.9e-127 458.0 369 60.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 2.9e-125 452.6 268 77.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.4e-124 450.3 362 60.2
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 9.3e-124 447.6 288 70.8
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-123 447.2 288 70.8
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.7e-123 446.0 360 55.3
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 7.9e-123 444.5 288 70.5
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 3.3e-121 439.1 317 64.0
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.3e-117 427.2 266 72.6
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.4e-111 407.1 362 53.3
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.2e-107 394.0 341 54.5
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 2.1e-107 393.3 194 95.4
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.8e-104 382.1 264 62.9
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.1e-103 379.4 231 74.9
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-102 376.7 251 69.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 2.1e-99 366.7 205 82.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.1e-97 360.9 290 55.2
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.3e-97 359.0 235 68.5
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.7e-97 358.6 321 56.7
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 9.7e-97 357.8 365 47.9
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.1e-90 335.5 205 73.7
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.4e-86 322.8 366 45.6
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.8e-85 319.3 345 49.3
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.4e-84 317.4 361 45.2
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 7.9e-83 311.6 259 55.2
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.3e-82 310.1 362 43.9
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.7e-80 303.9 229 62.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.8e-79 300.4 316 45.3
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.2e-76 289.7 183 73.8
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.0e-74 284.6 202 65.3
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.0e-74 283.1 205 65.9
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 3.0e-74 283.1 160 85.0
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.7e-62 243.4 245 50.2
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.2e-61 240.4 157 72.0
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 7.8e-46 188.7 109 83.5
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 8.9e-42 175.3 147 55.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 5.0e-37 159.5 242 38.0
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.9e-32 142.9 102 67.6
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.5e-28 131.3 109 60.6
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.0e-21 107.1 101 44.6
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-20 104.8 101 48.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.5e-09 68.2 124 28.2
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 1.9e-07 61.2 128 32.8


User provided reference genes

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