Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 1.5e-48 196.1 115 100.0
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 6.4e-39 164.1 88 94.3
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 9.3e-38 160.2 88 90.9
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 1.4e-30 136.3 116 64.7
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.1e-29 132.5 117 61.5
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 4.6e-29 131.3 121 72.7
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 6.0e-29 131.0 117 60.7
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 1.8e-28 129.4 121 60.3
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 2.3e-28 129.0 115 60.9
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.5e-27 126.3 122 63.9
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 1.5e-27 126.3 121 71.1
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 9.6e-27 123.6 117 62.4
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.5e-24 116.3 120 70.0
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 1.5e-24 116.3 87 71.3
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 6.5e-23 110.9 114 56.1
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 1.6e-21 106.3 93 63.4
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 1.1e-19 100.1 113 52.2
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 7.4e-19 97.4 82 64.6
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 7.4e-19 97.4 87 60.9
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 9.7e-19 97.1 111 50.5
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 6.3e-18 94.4 79 64.6
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 6.3e-18 94.4 97 57.7
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 9.0e-17 90.5 68 64.7
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 2.6e-16 89.0 84 58.3
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 5.9e-16 87.8 113 52.2
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 1.3e-15 86.7 99 54.5
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 2.9e-15 85.5 79 59.5
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 3.8e-15 85.1 108 51.9
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 2.5e-14 82.4 84 54.8
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 4.2e-14 81.6 107 43.9
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 9.4e-14 80.5 89 51.7
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 9.4e-14 80.5 114 46.5
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 3.6e-13 78.6 81 55.6
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 4.6e-13 78.2 59 67.8
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 1.0e-12 77.0 108 45.4
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 1.8e-12 76.3 80 51.2
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 3.9e-12 75.1 93 46.2
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.1e-12 74.7 95 48.4
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.5e-11 73.2 68 58.8
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.5e-11 73.2 65 60.0
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 1.5e-11 73.2 86 46.5
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 2.0e-11 72.8 68 58.8
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 2.5e-11 72.4 79 53.2
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 2.5e-11 72.4 108 48.1
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 3.3e-11 72.0 96 45.8
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.3e-11 72.0 57 66.7
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.7e-11 71.2 95 46.3
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.7e-11 71.2 95 46.3
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.7e-11 71.2 95 46.3
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 5.7e-11 71.2 54 68.5
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 9.7e-11 70.5 86 48.8
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 9.7e-11 70.5 56 62.5
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 1.7e-10 69.7 66 54.5
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 1.7e-10 69.7 68 57.4
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 1.7e-10 69.7 80 51.2
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 2.2e-10 69.3 66 53.0
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 6.3e-10 67.8 51 70.6
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 6.3e-10 67.8 122 41.8
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 8.2e-10 67.4 54 64.8
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 1.4e-09 66.6 73 54.8
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.4e-09 66.6 75 54.7
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.8e-09 66.2 42 73.8
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 9.1e-09 63.9 46 67.4
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.5e-08 63.2 47 68.1
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 1.5e-08 63.2 61 52.5
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.6e-08 62.4 64 57.8
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 2.6e-08 62.4 62 54.8
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 4.5e-08 61.6 69 50.7
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 1.0e-07 60.5 57 57.9
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 1.0e-07 60.5 78 47.4
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.3e-07 60.1 73 53.4
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.3e-07 60.1 73 53.4
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.3e-07 60.1 73 53.4
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 1.3e-07 60.1 68 50.0
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 2.9e-07 58.9 57 59.6
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 2.9e-07 58.9 57 59.6
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 3.8e-07 58.5 77 48.1
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 5.0e-07 58.2 57 59.6
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 6.5e-07 57.8 55 56.4
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 8.5e-07 57.4 55 60.0
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 8.5e-07 57.4 55 60.0
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 8.5e-07 57.4 55 60.0
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 8.5e-07 57.4 62 51.6
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 1.1e-06 57.0 43 69.8
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 1.4e-06 56.6 46 58.7
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.9e-06 56.2 48 60.4
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 3.2e-06 55.5 55 58.2
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 3.2e-06 55.5 55 58.2
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 3.2e-06 55.5 41 63.4
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 4.2e-06 55.1 41 61.0
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 5.5e-06 54.7 43 65.1
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 7.2e-06 54.3 58 53.4
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 7.2e-06 54.3 54 51.9


User provided reference genes

Program Settings