Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.5e-180 636.0 307 100.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 6.1e-169 597.4 305 93.4
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 2.0e-156 555.8 308 85.7
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.2e-151 540.0 290 88.6
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 4.9e-142 508.1 299 79.9
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 4.7e-137 491.5 294 80.6
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 9.2e-133 477.2 282 80.5
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 2.0e-132 476.1 293 77.1
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 7.8e-132 474.2 308 73.4
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.1e-130 470.3 267 82.8
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 4.9e-126 454.9 319 70.2
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 2.5e-114 416.0 283 70.3
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.3e-114 415.6 290 68.6
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 5.6e-114 414.8 281 68.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 9.5e-114 414.1 280 68.6
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.6e-113 413.3 285 69.1
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.6e-113 413.3 292 67.5
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.6e-113 412.1 292 67.5
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 6.2e-113 411.4 292 67.1
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 1.4e-112 410.2 279 69.5
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 4.0e-112 408.7 278 69.4
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.9e-110 402.5 283 64.7
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 6.4e-110 401.4 280 66.4
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 1.9e-109 399.8 284 64.8
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 9.2e-109 397.5 284 64.8
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 3.9e-107 392.1 280 67.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.1e-106 390.6 291 61.5
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.9e-106 389.8 278 65.8
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.7e-105 385.2 271 66.8
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.1e-104 384.0 283 64.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.8e-104 383.3 269 66.5
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.4e-104 382.9 283 64.0
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.4e-104 382.9 280 65.0
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 5.2e-104 381.7 286 64.3
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 6.8e-104 381.3 277 66.4
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.5e-103 380.2 261 68.2
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.5e-103 380.2 282 64.2
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.0e-103 379.8 280 62.1
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 2.6e-103 379.4 290 62.4
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 3.4e-103 379.0 271 66.1
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.4e-103 379.0 283 63.6
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 4.4e-103 378.6 264 65.2
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 7.6e-103 377.9 283 61.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.9e-102 375.9 279 65.2
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.4e-101 373.6 284 62.7
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.9e-101 373.2 278 62.2
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.9e-101 373.2 294 59.5
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.4e-101 372.9 246 68.7
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 3.2e-101 372.5 282 62.8
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 4.2e-101 372.1 277 62.1
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 5.4e-101 371.7 293 58.7
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 2.1e-100 369.8 284 59.9
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.6e-100 368.6 282 61.0
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 4.6e-100 368.6 293 58.7
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.0e-99 367.5 282 61.7
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.3e-99 367.1 283 63.3
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 6.6e-99 364.8 284 61.3
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 8.7e-99 364.4 268 63.4
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.1e-98 364.0 261 65.5
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.5e-98 363.6 273 63.4
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.9e-98 363.2 277 60.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.9e-98 363.2 276 60.9
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.3e-98 362.5 297 62.6
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 3.3e-98 362.5 283 61.1
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.3e-97 360.5 278 63.3
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.3e-97 360.5 251 64.5
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 6.2e-97 358.2 285 62.5
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.4e-96 357.1 283 60.1
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.4e-96 357.1 277 61.4
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 5.3e-96 355.1 292 57.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 4.5e-95 352.1 291 58.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 4.5e-95 352.1 278 61.2
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 5.8e-95 351.7 276 60.9
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 9.9e-95 350.9 272 62.9
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 9.9e-95 350.9 268 63.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 9.9e-95 350.9 253 65.6
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.7e-94 350.1 230 69.1
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.2e-93 345.9 255 62.0
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 9.3e-93 344.4 278 56.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.3e-91 340.5 276 59.1
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 3.9e-91 339.0 279 58.8
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.1e-91 338.6 255 60.8
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.8e-89 332.8 263 62.0
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.8e-88 330.1 292 56.5
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 3.1e-88 329.3 268 58.6
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 5.3e-88 328.6 258 59.3
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 2.6e-87 326.2 284 53.9
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 4.5e-87 325.5 276 57.2
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.3e-86 323.9 277 57.0
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 3.5e-84 315.8 279 55.2
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.8e-80 303.5 234 61.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.4e-80 303.1 270 52.6
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.6e-76 290.4 258 55.8
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 8.7e-75 284.6 275 55.3
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 2.4e-72 276.6 265 46.8
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.6e-71 273.1 275 50.2
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.7e-70 270.4 284 49.6
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.2e-70 270.0 271 51.7
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 5.0e-70 268.9 272 50.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 7.2e-69 265.0 275 51.6
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 2.7e-68 263.1 272 49.3
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 2.7e-68 263.1 272 49.3
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 3.6e-68 262.7 282 48.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.3e-67 260.0 256 48.8
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 3.0e-67 259.6 277 48.0
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 5.1e-67 258.8 275 46.9
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.1e-67 258.8 280 48.6
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 8.7e-67 258.1 279 48.4
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.9e-66 256.9 293 47.4
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 4.3e-66 255.8 288 45.5
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 5.7e-66 255.4 277 47.7
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 2.2e-65 253.4 279 46.2
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 4.8e-65 252.3 256 47.7
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.4e-64 250.8 273 46.5
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.0e-58 230.3 317 38.5
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.4e-50 201.8 248 41.9
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.7e-49 200.7 240 44.6
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.4e-48 196.8 301 36.2
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.5e-46 188.3 199 48.2
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 6.7e-43 178.7 275 36.7
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.2e-39 167.9 228 39.9
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 5.0e-38 162.5 272 37.9
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-36 157.9 199 42.2
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.0e-35 154.8 250 38.4
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.4e-35 154.5 199 42.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-35 154.1 199 41.2
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-34 150.6 242 37.2
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.4e-34 149.8 190 45.3
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 5.7e-34 149.1 181 45.3
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 7.5e-34 148.7 198 41.9
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.3e-33 147.9 179 44.1
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 4.8e-33 146.0 282 35.5
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 4.1e-32 142.9 200 42.0
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 8.5e-30 135.2 201 40.8
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 6.1e-28 129.0 146 44.5
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-27 127.5 153 43.8
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.0e-27 126.7 147 41.5
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 6.3e-25 119.0 146 43.8
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 2.9e-22 110.2 177 33.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-20 104.4 200 36.0
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-20 104.4 200 36.0
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.7e-17 94.4 150 39.3
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 1.4e-16 91.3 73 57.5
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-14 84.3 62 59.7
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-14 84.3 62 59.7
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 3.9e-14 83.2 95 42.1
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.3e-13 79.7 96 43.8


User provided reference genes

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